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Asym. Unit
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Asym.Unit (39 KB)
Biol.Unit 1 (36 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF OBELIN FROM OBELIA GENICULATA AT 1.82 A RESOLUTION
Authors
:
L. Deng, E. Vysotski, Z. -J. Liu, S. Markova, J. Lee, J. Rose, B. -C. Wang
Date
:
19 Jun 01 (Deposition) - 11 Jul 01 (Release) - 19 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.82
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Bioluminescence, Calcium-Regulated Photoprotein, Obelin, Obelia, Hydroid, Luminescent Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Deng, E. Vysotski, Z. -J. Liu, S. Markova, J. Lee, J. Rose, B. -C. Wang
The Crystal Structure Of Obelin From Obelia Geniculata At 1. 82 Angstrom Resolution
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: C2-HYDROPEROXY-COELENTERAZINE (CZHa)
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No.
Name
Count
Type
Full Name
1
CZH
1
Ligand/Ion
C2-HYDROPEROXY-COELENTERAZINE
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Sites
(1, 1)
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All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:22 , MET A:25 , TYR A:28 , LEU A:29 , ILE A:42 , ILE A:50 , PHE A:88 , TRP A:92 , TRP A:114 , GLY A:115 , TRP A:135 , TYR A:138 , MET A:171 , HIS A:175 , TRP A:179 , TYR A:190 , HOH A:199
BINDING SITE FOR RESIDUE CZH A 197
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(2, 6)
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1: EF_HAND_2 (A:18-51|A:110-145|A:146-181)
2: EF_HAND_1 (A:30-42|A:123-135|A:159-171)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
OBL_OBELO
17-52
110-145
146-181
3
A:18-51
A:110-145
A:146-181
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
OBL_OBELO
30-42
123-135
159-171
3
A:30-42
A:123-135
A:159-171
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
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All SCOP Domains
1a: SCOP_d1jf0a_ (A:)
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Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
Calmodulin-like
(356)
Protein domain
:
Calcium-regulated photoprotein
(11)
Hydrozoa (Obelia geniculata), obelin [TaxId: 185004]
(1)
1a
d1jf0a_
A:
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_1jf0A00 (A:4-195)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Recoverin; domain 1
(474)
Homologous Superfamily
:
EF-hand
(412)
Obelia longissima. Organism_taxid: 32570.
(8)
1a
1jf0A00
A:4-195
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_EF_hand_3_1jf0A01 (A:23-45)
2a: PFAM_EF_hand_5_1jf0A02 (A:93-173)
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Clan
:
EF_hand
(270)
Family
:
EF_hand_3
(27)
Obelia longissima (Black sea hydrozoan) (Laomedea longissima)
(6)
1a
EF_hand_3-1jf0A01
A:23-45
Family
:
EF_hand_5
(126)
Obelia longissima (Black sea hydrozoan) (Laomedea longissima)
(6)
2a
EF_hand_5-1jf0A02
A:93-173
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