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1JEI
Asym. Unit
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Asym.Unit (150 KB)
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Models
(10 )
Title
:
LEM DOMAIN OF HUMAN INNER NUCLEAR MEMBRANE PROTEIN EMERIN
Authors
:
N. Wolff, B. Gilquin, K. Courchay, I. Callebaut, S. Zinn-Justin
Date
:
18 Jun 01 (Deposition) - 04 Jul 01 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (10 x)
Keywords
:
Emerin Nucleus Membrane Domain Dystrophy, Membrane Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Wolff, B. Gilquin, K. Courchay, I. Callebaut, H. J. Worman, S. Zinn-Justin
Structural Analysis Of Emerin, An Inner Nuclear Membrane Protein Mutated In X-Linked Emery-Dreifuss Muscular Dystrophy
Febs Lett. V. 501 171 2001
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_005198 (S53F, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_005198
S
54
F
EMD_HUMAN
Disease (EDMD1)
---
A
S
53
F
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Exons
(2, 2)
Info
All Exons
Exon 1.1a (A:1-27)
Exon 1.2b (A:27-53)
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2b
3: Boundary 1.2b/1.3a
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000369842
1a
ENSE00001925261
X:153607557-153607926
370
EMD_HUMAN
1-28
28
1
A:1-27
27
1.2b
ENST00000369842
2b
ENSE00001669344
X:153608050-153608154
105
EMD_HUMAN
28-63
36
1
A:27-53
27
1.3a
ENST00000369842
3a
ENSE00001626504
X:153608302-153608379
78
EMD_HUMAN
63-89
27
0
-
-
1.3d
ENST00000369842
3d
ENSE00001687247
X:153608594-153608727
134
EMD_HUMAN
89-133
45
0
-
-
1.4b
ENST00000369842
4b
ENSE00001605338
X:153609113-153609162
50
EMD_HUMAN
134-150
17
0
-
-
1.4j
ENST00000369842
4j
ENSE00000868367
X:153609242-153609883
642
EMD_HUMAN
150-254
105
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1jeia_ (A:)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
LEM/SAP HeH motif
(33)
Superfamily
:
LEM domain
(6)
Family
:
LEM domain
(6)
Protein domain
:
Inner nuclear membrane protein emerin
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1jeia_
A:
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_1jeiA00 (A:1-53)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1
(23)
Homologous Superfamily
:
[code=1.10.720.40, no name defined]
(6)
[unclassified]
(3)
1a
1jeiA00
A:1-53
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_LEM_1jeiA01 (A:1-43)
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Clan
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HeH
(20)
Family
:
LEM
(2)
Homo sapiens (Human)
(2)
1a
LEM-1jeiA01
A:1-43
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Chain A
Asymmetric Unit 1
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