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1JEC
Asym. Unit
Info
Asym.Unit (102 KB)
Biol.Unit 1 (550 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ATP SULFURYLASE IN COMPLEX WITH THIOSULFATE
Authors
:
T. C. Ullrich, R. Huber
Date
:
17 Jun 01 (Deposition) - 14 Nov 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (6x)
Keywords
:
Alpha-Beta Protein, Beta-Barrel, Rossmann-Fold, Inhibitor Complex, Thiosulfate, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. C. Ullrich, R. Huber
The Complex Structures Of Atp Sulfurylase With Thiosulfate, Adp And Chlorate Reveal New Insights In Inhibitory Effects And The Catalytic Cycle.
J. Mol. Biol. V. 313 1117 2001
[
close entry info
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Hetero Components
(7, 28)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
1c: ACETIC ACID (ACYc)
1d: ACETIC ACID (ACYd)
1e: ACETIC ACID (ACYe)
1f: ACETIC ACID (ACYf)
1g: ACETIC ACID (ACYg)
1h: ACETIC ACID (ACYh)
1i: ACETIC ACID (ACYi)
1j: ACETIC ACID (ACYj)
1k: ACETIC ACID (ACYk)
1l: ACETIC ACID (ACYl)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
3a: CADMIUM ION (CDa)
3b: CADMIUM ION (CDb)
3c: CADMIUM ION (CDc)
3d: CADMIUM ION (CDd)
3e: CADMIUM ION (CDe)
3f: CADMIUM ION (CDf)
3g: CADMIUM ION (CDg)
4a: MAGNESIUM ION (MGa)
5a: SODIUM ION (NAa)
5b: SODIUM ION (NAb)
5c: SODIUM ION (NAc)
6a: SULFATE ION (SO4a)
7a: THIOSULFATE (THJa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
12
Ligand/Ion
ACETIC ACID
2
CA
3
Ligand/Ion
CALCIUM ION
3
CD
7
Ligand/Ion
CADMIUM ION
4
MG
1
Ligand/Ion
MAGNESIUM ION
5
NA
3
Ligand/Ion
SODIUM ION
6
SO4
1
Ligand/Ion
SULFATE ION
7
THJ
1
Ligand/Ion
THIOSULFATE
[
close Hetero Component info
]
Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:168 , HIS A:235 , HIS A:236 , SO4 A:525 , ACY A:535
BINDING SITE FOR RESIDUE CD A 512
02
AC2
SOFTWARE
PRO A:39 , CYS A:43 , HOH A:827 , HOH A:966 , HOH A:1035
BINDING SITE FOR RESIDUE CD A 513
03
AC3
SOFTWARE
LEU A:18 , GLU A:22 , HIS A:319 , ACY A:526 , HOH A:849
BINDING SITE FOR RESIDUE CD A 514
04
AC4
SOFTWARE
GLU A:182 , ACY A:533
BINDING SITE FOR RESIDUE CD A 515
05
AC5
SOFTWARE
ASP A:189 , HIS A:494 , ACY A:527 , ACY A:534
BINDING SITE FOR RESIDUE CD A 516
06
AC6
SOFTWARE
ASP A:151
BINDING SITE FOR RESIDUE CA A 517
07
AC7
SOFTWARE
GLU A:409 , HOH A:1038
BINDING SITE FOR RESIDUE CD A 518
08
AC8
SOFTWARE
LYS A:297 , ASP A:303
BINDING SITE FOR RESIDUE CA A 519
09
AC9
SOFTWARE
ASP A:489 , HOH A:603 , HOH A:615 , HOH A:856
BINDING SITE FOR RESIDUE CA A 520
10
BC1
SOFTWARE
GLU A:46 , PRO A:164 , HIS A:166 , HOH A:1026
BINDING SITE FOR RESIDUE MG A 521
11
BC2
SOFTWARE
ASP A:309 , HOH A:911
BINDING SITE FOR RESIDUE NA A 1522
12
BC3
SOFTWARE
HIS A:204 , HOH A:723 , HOH A:770 , HOH A:944
BINDING SITE FOR RESIDUE NA A 1537
13
BC4
SOFTWARE
ASP A:322 , HOH A:703 , HOH A:796 , HOH A:802
BINDING SITE FOR RESIDUE NA A 1538
14
BC5
SOFTWARE
THJ A:540 , HOH A:1033
BINDING SITE FOR RESIDUE CD A 600
15
BC6
SOFTWARE
HIS A:166 , ASP A:168 , ARG A:173 , SER A:417 , CD A:512 , ACY A:535
BINDING SITE FOR RESIDUE SO4 A 525
16
BC7
SOFTWARE
GLN A:195 , THR A:196 , ARG A:197 , MET A:263 , HIS A:292 , ALA A:293 , CD A:600 , HOH A:637 , HOH A:638
BINDING SITE FOR RESIDUE THJ A 540
17
BC8
SOFTWARE
ALA A:17 , LEU A:18 , LYS A:20 , ASN A:21 , GLU A:22 , HIS A:319 , CD A:514 , HOH A:825 , HOH A:849
BINDING SITE FOR RESIDUE ACY A 526
18
BC9
SOFTWARE
GLN A:187 , ASP A:189 , PRO A:491 , SER A:493 , HIS A:494 , CD A:516 , ACY A:534
BINDING SITE FOR RESIDUE ACY A 527
19
CC1
SOFTWARE
ASN A:216 , GLU A:490 , PRO A:491 , HIS A:494
BINDING SITE FOR RESIDUE ACY A 528
20
CC2
SOFTWARE
LYS A:174 , LEU A:181 , GLU A:182 , SER A:185
BINDING SITE FOR RESIDUE ACY A 529
21
CC3
SOFTWARE
GLU A:130 , ARG A:134
BINDING SITE FOR RESIDUE ACY A 530
22
CC4
SOFTWARE
PRO A:55 , THR A:57 , ASP A:64 , HOH A:801
BINDING SITE FOR RESIDUE ACY A 531
23
CC5
SOFTWARE
THR A:70 , ASP A:71
BINDING SITE FOR RESIDUE ACY A 532
24
CC6
SOFTWARE
GLY A:171 , LYS A:174 , GLU A:182 , ARG A:186 , PHE A:255 , CD A:515
BINDING SITE FOR RESIDUE ACY A 533
25
CC7
SOFTWARE
ASP A:189 , HIS A:494 , CD A:516 , ACY A:527 , HOH A:678
BINDING SITE FOR RESIDUE ACY A 534
26
CC8
SOFTWARE
HIS A:236 , SER A:417 , CD A:512 , SO4 A:525 , HOH A:1034
BINDING SITE FOR RESIDUE ACY A 535
27
CC9
SOFTWARE
ASN A:251 , HOH A:667
BINDING SITE FOR RESIDUE ACY A 536
28
DC1
SOFTWARE
GLY A:425 , SER A:449 , HOH A:602 , HOH A:672 , HOH A:1006
BINDING SITE FOR RESIDUE ACY A 537
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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]
Exons
(1, 1)
Info
All Exons
Exon 1.1 (A:2-511)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YJR010W
1
YJR010W.1
X:456231-457766
1536
MET3_YEAST
1-511
511
1
A:2-511
510
[
close EXON info
]
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d1jeca1 (A:2-168)
2a: SCOP_d1jeca2 (A:169-389)
3a: SCOP_d1jeca3 (A:390-511)
View:
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Classes
(
)
(
)
Folds
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(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
PUA domain-like
(96)
Superfamily
:
PUA domain-like
(96)
Family
:
ATP sulfurylase N-terminal domain
(15)
Protein domain
:
ATP sulfurylase N-terminal domain
(15)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(8)
1a
d1jeca1
A:2-168
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Adenine nucleotide alpha hydrolase-like
(440)
Superfamily
:
Nucleotidylyl transferase
(325)
Family
:
ATP sulfurylase catalytic domain
(16)
Protein domain
:
ATP sulfurylase catalytic domain
(15)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(8)
2a
d1jeca2
A:169-389
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
ATP sulfurylase C-terminal domain
(9)
Protein domain
:
ATP sulfurylase C-terminal domain
(9)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(7)
3a
d1jeca3
A:390-511
[
close SCOP info
]
CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_1jecA03 (A:390-511)
2a: CATH_1jecA01 (A:190-389)
3a: CATH_1jecA02 (A:2-189)
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(
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Baker's yeast (Saccharomyces cerevisiae)
(61)
1a
1jecA03
A:390-511
Homologous Superfamily
:
Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1
(328)
Baker's yeast (Saccharomyces cerevisiae)
(11)
2a
1jecA01
A:190-389
Architecture
:
Roll
(3276)
Topology
:
Sulfate adenylyltransferase
(12)
Homologous Superfamily
:
Sulfate adenylyltransferase
(12)
Baker's yeast (Saccharomyces cerevisiae)
(8)
3a
1jecA02
A:2-189
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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