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1JDY
Asym. Unit
Info
Asym.Unit (189 KB)
Biol.Unit 1 (93 KB)
Biol.Unit 2 (95 KB)
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(1)
Title
:
RABBIT MUSCLE PHOSPHOGLUCOMUTASE
Authors
:
W. J. Ray Junior, S. Baranidharan, Y. Liu
Date
:
11 Jul 96 (Deposition) - 12 Mar 97 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Phosphoglucomutase, Phosphotransferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Baranidharan, Y. Liu, W. J. Ray Junior
To Be Published
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
2a: PHOSPHOSERINE (SEPa)
2b: PHOSPHOSERINE (SEPb)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CD
2
Ligand/Ion
CADMIUM ION
2
SEP
2
Mod. Amino Acid
PHOSPHOSERINE
3
SO4
2
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: MBA (UNKNOWN)
6: MBB (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SEP A:116 , ASP A:287 , ASP A:289 , ASP A:291
BINDING SITE FOR RESIDUE CD A 562
2
AC2
SOFTWARE
THR A:356 , ARG A:502
BINDING SITE FOR RESIDUE SO4 A 563
3
AC3
SOFTWARE
SEP B:116 , ASP B:287 , ASP B:289 , ASP B:291
BINDING SITE FOR RESIDUE CD B 562
4
AC4
SOFTWARE
ARG B:502 , SER B:504 , ARG B:514
BINDING SITE FOR RESIDUE SO4 B 563
5
MBA
UNKNOWN
ASP A:287 , ASP A:289 , ASP A:291 , SEP A:116
METAL ATOM IN 562, ASP RESIDUES 287, 289, 291.
6
MBB
UNKNOWN
ASP B:287 , ASP B:289 , ASP B:291 , SEP B:116
METAL ATOM IN 562, ASP RESIDUES 287, 289, 291.
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PGM_PMM (A:110-119,B:110-119)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PGM_PMM
PS00710
Phosphoglucomutase and phosphomannomutase phosphoserine signature.
PGM1_RABIT
111-120
2
A:110-119
B:110-119
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1jdya4 (A:421-561)
1b: SCOP_d1jdyb4 (B:421-561)
2a: SCOP_d1jdya1 (A:1-190)
2b: SCOP_d1jdya2 (A:191-303)
2c: SCOP_d1jdya3 (A:304-420)
2d: SCOP_d1jdyb1 (B:1-190)
2e: SCOP_d1jdyb2 (B:191-303)
2f: SCOP_d1jdyb3 (B:304-420)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
TBP-like
(289)
Superfamily
:
Phosphoglucomutase, C-terminal domain
(24)
Family
:
Phosphoglucomutase, C-terminal domain
(21)
Protein domain
:
Phosphoglucomutase
(6)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(6)
1a
d1jdya4
A:421-561
1b
d1jdyb4
B:421-561
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Phosphoglucomutase, first 3 domains
(23)
Superfamily
:
Phosphoglucomutase, first 3 domains
(23)
Family
:
Phosphoglucomutase, first 3 domains
(20)
Protein domain
:
Phosphoglucomutase
(6)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(6)
2a
d1jdya1
A:1-190
2b
d1jdya2
A:191-303
2c
d1jdya3
A:304-420
2d
d1jdyb1
B:1-190
2e
d1jdyb2
B:191-303
2f
d1jdyb3
B:304-420
[
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1jdyA04 (A:401-552)
1b: CATH_1jdyB04 (B:401-552)
2a: CATH_1jdyA02 (A:198-300)
2b: CATH_1jdyA03 (A:301-400)
2c: CATH_1jdyB03 (B:301-400)
2d: CATH_1jdyA01 (A:1-197)
2e: CATH_1jdyB01 (B:1-197)
2f: CATH_1jdyB02 (B:198-300)
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Classes
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)
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Architectures
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)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
TATA-Binding Protein
(118)
Homologous Superfamily
:
Major birch pollen allergen Bet v 1
(22)
Rabbit (Oryctolagus cuniculus)
(6)
1a
1jdyA04
A:401-552
1b
1jdyB04
B:401-552
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3
(24)
Homologous Superfamily
:
Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3
(24)
Rabbit (Oryctolagus cuniculus)
(6)
2a
1jdyA02
A:198-300
2b
1jdyA03
A:301-400
2c
1jdyB03
B:301-400
2d
1jdyA01
A:1-197
2e
1jdyB01
B:1-197
2f
1jdyB02
B:198-300
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Pfam Domains
(4, 8)
Info
all PFAM domains
1a: PFAM_PGM_PMM_III_1jdyB01 (B:305-419)
1b: PFAM_PGM_PMM_III_1jdyB02 (B:305-419)
2a: PFAM_PGM_PMM_II_1jdyB03 (B:192-300)
2b: PFAM_PGM_PMM_II_1jdyB04 (B:192-300)
3a: PFAM_PGM_PMM_IV_1jdyB05 (B:441-544)
3b: PFAM_PGM_PMM_IV_1jdyB06 (B:441-544)
4a: PFAM_PGM_PMM_I_1jdyB07 (B:13-157)
4b: PFAM_PGM_PMM_I_1jdyB08 (B:13-157)
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Clans
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)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: PGM_PMM_III]
(17)
Family
:
PGM_PMM_III
(17)
Oryctolagus cuniculus (Rabbit)
(4)
1a
PGM_PMM_III-1jdyB01
B:305-419
1b
PGM_PMM_III-1jdyB02
B:305-419
Clan
:
no clan defined [family: PGM_PMM_II]
(17)
Family
:
PGM_PMM_II
(17)
Oryctolagus cuniculus (Rabbit)
(4)
2a
PGM_PMM_II-1jdyB03
B:192-300
2b
PGM_PMM_II-1jdyB04
B:192-300
Clan
:
no clan defined [family: PGM_PMM_IV]
(18)
Family
:
PGM_PMM_IV
(18)
Oryctolagus cuniculus (Rabbit)
(4)
3a
PGM_PMM_IV-1jdyB05
B:441-544
3b
PGM_PMM_IV-1jdyB06
B:441-544
Clan
:
no clan defined [family: PGM_PMM_I]
(17)
Family
:
PGM_PMM_I
(17)
Oryctolagus cuniculus (Rabbit)
(4)
4a
PGM_PMM_I-1jdyB07
B:13-157
4b
PGM_PMM_I-1jdyB08
B:13-157
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Asym.Unit (189 KB)
Header - Asym.Unit
Biol.Unit 1 (93 KB)
Header - Biol.Unit 1
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