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Biol. Unit 1
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Asym.Unit (83 KB)
Biol.Unit 1 (157 KB)
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Title
:
CRYSTAL STRUCTURE OF HUMAN L-ARGININE:GLYCINE AMIDINOTRANSFERASE IN COMPLEX WITH L-NORVALINE
Authors
:
E. Fritsche, A. Humm, R. Huber
Date
:
12 Oct 98 (Deposition) - 09 Feb 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Creatine Biosynthesis, Catalytic Triad, Reaction Mechanism, Novel Fold, Fivefold Pseudosymmetry, Transferase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Fritsche, A. Humm, R. Huber
The Ligand-Induced Structural Changes Of Human L-Arginine:Glycine Amidinotransferase. A Mutational And Crystallographic Study.
J. Biol. Chem. V. 274 3026 1999
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
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All Hetero Components
1a: NORVALINE (NVAa)
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No.
Name
Count
Type
Full Name
1
NVA
2
Ligand/Ion
NORVALINE
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Sites
(1, 1)
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1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
MET A:302 , ALA A:306 , ARG A:322 , SER A:354 , SER A:355 , CYS A:407 , HOH A:603 , HOH A:628
BINDING SITE FOR RESIDUE NVA A 500
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SAPs(SNPs)/Variants
(4, 8)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_020305 (Q110H, chain A, )
2: VAR_069816 (Y203S, chain A, )
3: VAR_071789 (R413Q, chain A, )
4: VAR_071790 (R413W, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_020305
Q
110
H
GATM_HUMAN
Polymorphism
1288775
A
Q
110
H
2
UniProt
VAR_069816
Y
203
S
GATM_HUMAN
Disease (CCDS3)
---
A
Y
203
S
3
UniProt
VAR_071789
R
413
Q
GATM_HUMAN
Disease (CCDS3)
---
A
R
413
Q
4
UniProt
VAR_071790
R
413
W
GATM_HUMAN
Disease (CCDS3)
---
A
R
413
W
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
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Exons
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SCOP Domains
(1, 1)
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1a: SCOP_d1jdxa_ (A:)
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Protein Domains
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Pentein, beta/alpha-propeller
(68)
Superfamily
:
Pentein
(68)
Family
:
Amidinotransferase
(12)
Protein domain
:
L-arginine: glycine amidinotransferase
(11)
Human (Homo sapiens) [TaxId: 9606]
(11)
1a
d1jdxa_
A:
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CATH Domains
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all CATH domains
1a: CATH_1jdxA00 (A:64-423)
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(
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Class
:
Alpha Beta
(26913)
Architecture
:
5-stranded Propeller
(36)
Topology
:
L-arginine/glycine Amidinotransferase; Chain A
(36)
Homologous Superfamily
:
L-arginine/glycine Amidinotransferase; Chain A
(33)
Human (Homo sapiens)
(11)
1a
1jdxA00
A:64-423
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_Amidinotransf_1jdxA01 (A:246-414)
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Clan
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GME
(20)
Family
:
Amidinotransf
(10)
Homo sapiens (Human)
(6)
1a
Amidinotransf-1jdxA01
A:246-414
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