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1JDS
Biol. Unit 1
Info
Asym.Unit (226 KB)
Biol.Unit 1 (222 KB)
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(1)
Title
:
5'-DEOXY-5'-METHYLTHIOADENOSINE PHOSPHORYLASE COMPLEX WITH PHOSPHATE (SPACE GROUP P21)
Authors
:
T. C. Appleby, I. I. Mathews, M. Porcelli, G. Cacciapuoti, S. E. Ealick
Date
:
15 Jun 01 (Deposition) - 26 Oct 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Alpha-Beta Protein, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. C. Appleby, I. I. Mathews, M. Porcelli, G. Cacciapuoti, S. E. Ealick
Three-Dimensional Structure Of A Hyperthermophilic 5'-Deoxy-5'-Methylthioadenosine Phosphorylase From Sulfolobus Solfataricus.
J. Biol. Chem. V. 276 39232 2001
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: PHOSPHATE ION (PO4a)
1b: PHOSPHATE ION (PO4b)
1c: PHOSPHATE ION (PO4c)
1d: PHOSPHATE ION (PO4d)
1e: PHOSPHATE ION (PO4e)
1f: PHOSPHATE ION (PO4f)
2a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
2b: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSb)
2c: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSc)
2d: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSd)
2e: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSe)
2f: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PO4
6
Ligand/Ion
PHOSPHATE ION
2
TRS
6
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:21 , ARG A:25 , ARG A:86 , GLY A:88 , THR A:89 , HOH A:607 , TRS A:1270 , ARG D:43
BINDING SITE FOR RESIDUE PO4 A 1250
02
AC2
SOFTWARE
GLY B:21 , ARG B:25 , ARG B:86 , GLY B:88 , THR B:89 , HOH B:599 , TRS B:2270 , ARG C:43
BINDING SITE FOR RESIDUE PO4 B 2250
03
AC3
SOFTWARE
ARG B:43 , GLY C:21 , ARG C:25 , ARG C:86 , GLY C:88 , THR C:89 , HOH C:593 , TRS C:3270
BINDING SITE FOR RESIDUE PO4 C 3250
04
AC4
SOFTWARE
ARG A:43 , GLY D:21 , ARG D:25 , ARG D:86 , GLY D:88 , THR D:89 , HOH D:604 , TRS D:4270
BINDING SITE FOR RESIDUE PO4 D 4250
05
AC5
SOFTWARE
GLY E:21 , ARG E:25 , ARG E:86 , GLY E:88 , THR E:89 , HOH E:595 , TRS E:5270 , ARG F:43
BINDING SITE FOR RESIDUE PO4 E 5250
06
AC6
SOFTWARE
ARG E:43 , GLY F:21 , ARG F:25 , ARG F:86 , GLY F:88 , THR F:89 , HOH F:594 , TRS F:6270
BINDING SITE FOR RESIDUE PO4 F 6250
07
AC7
SOFTWARE
ARG A:86 , THR A:89 , GLU A:180 , MET A:181 , GLU A:182 , PO4 A:1250 , HIS D:5 , ARG D:43
BINDING SITE FOR RESIDUE TRS A 1270
08
AC8
SOFTWARE
ARG B:86 , THR B:89 , GLU B:180 , MET B:181 , GLU B:182 , PO4 B:2250 , HIS C:5
BINDING SITE FOR RESIDUE TRS B 2270
09
AC9
SOFTWARE
HIS B:5 , ARG C:86 , THR C:89 , GLU C:180 , MET C:181 , GLU C:182 , PO4 C:3250
BINDING SITE FOR RESIDUE TRS C 3270
10
BC1
SOFTWARE
HIS A:5 , ARG D:86 , THR D:89 , GLU D:180 , MET D:181 , GLU D:182 , PO4 D:4250
BINDING SITE FOR RESIDUE TRS D 4270
11
BC2
SOFTWARE
ARG E:86 , THR E:89 , GLU E:180 , MET E:181 , GLU E:182 , PO4 E:5250 , HIS F:5
BINDING SITE FOR RESIDUE TRS E 5270
12
BC3
SOFTWARE
HIS E:5 , ARG F:86 , THR F:89 , GLU F:180 , MET F:181 , GLU F:182 , PO4 F:6250
BINDING SITE FOR RESIDUE TRS F 6270
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: PNP_UDP_1 (A:61-76,B:61-76,C:61-76,D:61-76,E:...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PNP_UDP_1
PS01232
Purine and other phosphorylases family 1 signature.
PNPH_SULSO
61-76
6
A:61-76
B:61-76
C:61-76
D:61-76
E:61-76
F:61-76
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1jdsa_ (A:)
1b: SCOP_d1jdsb_ (B:)
1c: SCOP_d1jdsc_ (C:)
1d: SCOP_d1jdsd_ (D:)
1e: SCOP_d1jdse_ (E:)
1f: SCOP_d1jdsf_ (F:)
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Protein Domains
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Phosphorylase/hydrolase-like
(558)
Superfamily
:
Purine and uridine phosphorylases
(283)
Family
:
Purine and uridine phosphorylases
(224)
Protein domain
:
5'-deoxy-5'-methylthioadenosine phosphorylase
(18)
Sulfolobus solfataricus [TaxId: 2287]
(9)
1a
d1jdsa_
A:
1b
d1jdsb_
B:
1c
d1jdsc_
C:
1d
d1jdsd_
D:
1e
d1jdse_
E:
1f
d1jdsf_
F:
[
close SCOP info
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1jdsC00 (C:3-236)
1b: CATH_1jdsF00 (F:3-236)
1c: CATH_1jdsA00 (A:3-236)
1d: CATH_1jdsB00 (B:3-236)
1e: CATH_1jdsD00 (D:3-236)
1f: CATH_1jdsE00 (E:3-236)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1580, no name defined]
(194)
Sulfolobus solfataricus. Organism_taxid: 2287.
(9)
1a
1jdsC00
C:3-236
1b
1jdsF00
F:3-236
1c
1jdsA00
A:3-236
1d
1jdsB00
B:3-236
1e
1jdsD00
D:3-236
1f
1jdsE00
E:3-236
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain F
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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Asym.Unit (226 KB)
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