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Getting 'Exon' information from database.
1JCZ
Asym. Unit
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Asym.Unit (100 KB)
Biol.Unit 1 (96 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE EXTRACELLULAR DOMAIN OF HUMAN CARBONIC ANHYDRASE XII
Authors
:
D. A. Whittington, A. Waheed, B. Ulmasov, G. N. Shah, J. H. Grubb, W. S. Sl D. W. Christianson
Date
:
11 Jun 01 (Deposition) - 17 Aug 01 (Release) - 16 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Extracellular Domain, Human Carbonic Anhydrase Xii, Bitopic Membrane Protein, Type I Membrane Protein, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. A. Whittington, A. Waheed, B. Ulmasov, G. N. Shah, J. H. Grubb, W. S. Sly, D. W. Christianson
Crystal Structure Of The Dimeric Extracellular Domain Of Human Carbonic Anhydrase Xii, A Bitopic Membrane Protein Overexpressed In Certain Cancer Tumor Cells.
Proc. Natl. Acad. Sci. Usa V. 98 9545 2001
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
2
Ligand/Ion
ACETIC ACID
2
ZN
2
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:94 , HIS A:96 , HIS A:119 , ACY A:801 , HOH A:1096
BINDING SITE FOR RESIDUE ZN A 901
2
AC2
SOFTWARE
HIS B:94 , HIS B:96 , HIS B:119 , ACY B:802 , HOH B:1071
BINDING SITE FOR RESIDUE ZN B 902
3
AC3
SOFTWARE
HIS A:94 , HIS A:119 , VAL A:143 , LEU A:198 , THR A:199 , ZN A:901 , HOH A:1057 , HOH A:1096
BINDING SITE FOR RESIDUE ACY A 801
4
AC4
SOFTWARE
HIS B:94 , HIS B:119 , VAL B:143 , LEU B:198 , THR B:199 , ZN B:902 , HOH B:1071 , HOH B:1079
BINDING SITE FOR RESIDUE ACY B 802
[
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_065292 (E117K, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_065292
E
143
K
CAH12_HUMAN
Disease (HCHLH)
---
A/B
E
117
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ALPHA_CA_1 (A:105-121,B:105-121)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALPHA_CA_1
PS00162
Alpha-carbonic anhydrases signature.
CAH12_HUMAN
131-147
2
A:105-121
B:105-121
[
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Exons
(7, 14)
Info
All Exons
Exon 1.2 (A:4-9 | B:4-9)
Exon 1.3 (A:9-66 | B:9-66)
Exon 1.4 (A:66-117 (gaps) | B:66-117 (gaps))
Exon 1.5 (A:118-149 | B:118-149)
Exon 1.6 (A:150-171 | B:150-171)
Exon 1.7 (A:171-222 | B:171-222)
Exon 1.8 (A:223-261 | B:223-261)
View:
Select:
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All Exon Boundaries
1: Boundary 1.1a/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7
7: Boundary 1.7/1.8
8: Boundary 1.8/1.9
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000178638
1a
ENSE00001916299
chr15:
63674360-63673835
526
CAH12_HUMAN
1-29
29
0
-
-
1.2
ENST00000178638
2
ENSE00001033986
chr15:
63667877-63667857
21
CAH12_HUMAN
29-36
8
2
A:4-9
B:4-9
6
6
1.3
ENST00000178638
3
ENSE00000931536
chr15:
63638908-63638729
180
CAH12_HUMAN
36-96
61
2
A:9-66
B:9-66
61
61
1.4
ENST00000178638
4
ENSE00000931537
chr15:
63637818-63637676
143
CAH12_HUMAN
96-143
48
2
A:66-117 (gaps)
B:66-117 (gaps)
53
53
1.5
ENST00000178638
5
ENSE00000692813
chr15:
63634296-63634201
96
CAH12_HUMAN
144-175
32
2
A:118-149
B:118-149
32
32
1.6
ENST00000178638
6
ENSE00000449602
chr15:
63632982-63632919
64
CAH12_HUMAN
176-197
22
2
A:150-171
B:150-171
22
22
1.7
ENST00000178638
7
ENSE00000449603
chr15:
63632644-63632487
158
CAH12_HUMAN
197-249
53
2
A:171-222
B:171-222
53
53
1.8
ENST00000178638
8
ENSE00001106427
chr15:
63631144-63631018
127
CAH12_HUMAN
250-292
43
2
A:223-261
B:223-261
41
41
1.9
ENST00000178638
9
ENSE00000692799
chr15:
63620329-63620297
33
CAH12_HUMAN
292-303
12
0
-
-
1.10
ENST00000178638
10
ENSE00000692794
chr15:
63619432-63619348
85
CAH12_HUMAN
303-331
29
0
-
-
1.11c
ENST00000178638
11c
ENSE00001820066
chr15:
63618556-63613577
4980
CAH12_HUMAN
331-354
24
0
-
-
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1jcza_ (A:)
1b: SCOP_d1jczb_ (B:)
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(
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Carbonic anhydrase
(525)
Superfamily
:
Carbonic anhydrase
(525)
Family
:
Carbonic anhydrase
(513)
Protein domain
:
Carbonic anhydrase
(499)
Human (Homo sapiens), isozyme XII [TaxId: 9606]
(5)
1a
d1jcza_
A:
1b
d1jczb_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1jczA00 (A:4-261)
1b: CATH_1jczB00 (B:4-261)
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Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Carbonic Anhydrase II
(332)
Homologous Superfamily
:
Carbonic Anhydrase II
(332)
Human (Homo sapiens)
(309)
1a
1jczA00
A:4-261
1b
1jczB00
B:4-261
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Carb_anhydrase_1jczB01 (B:5-260)
1b: PFAM_Carb_anhydrase_1jczB02 (B:5-260)
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Clans
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)
(
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Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Carb_anhydrase]
(168)
Family
:
Carb_anhydrase
(168)
Homo sapiens (Human)
(157)
1a
Carb_anhydrase-1jczB01
B:5-260
1b
Carb_anhydrase-1jczB02
B:5-260
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