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1JCT
Asym. Unit
Info
Asym.Unit (145 KB)
Biol.Unit 1 (281 KB)
Biol.Unit 2 (275 KB)
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(1)
Title
:
GLUCARATE DEHYDRATASE, N341L MUTANT ORTHORHOMBIC FORM
Authors
:
A. M. Gulick, B. K. Hubbard, J. A. Gerlt, I. Rayment
Date
:
11 Jun 01 (Deposition) - 05 Sep 01 (Release) - 16 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (4x)
Biol. Unit 2: B (4x)
Keywords
:
Alpha/Beta Barrel, Enolase Superfamily, Lyase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
A. M. Gulick, B. K. Hubbard, J. A. Gerlt, I. Rayment
Evolution Of Enzymatic Activities In The Enolase Superfamily: Identification Of The General Acid Catalyst In The Active Site Of D-Glucarate Dehydratase From Escherichia Coli.
Biochemistry V. 40 10054 2001
(for further references see the
PDB file header
)
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: D-GLUCARATE (GKRa)
1b: D-GLUCARATE (GKRb)
2a: ISOPROPYL ALCOHOL (IPAa)
2b: ISOPROPYL ALCOHOL (IPAb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GKR
2
Ligand/Ion
D-GLUCARATE
2
IPA
2
Ligand/Ion
ISOPROPYL ALCOHOL
3
MG
2
Ligand/Ion
MAGNESIUM ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:235 , GLU A:260 , ASN A:289 , GKR A:499 , HOH A:624
BINDING SITE FOR RESIDUE MG A 498
2
AC2
SOFTWARE
LYS B:205 , ASP B:235 , GLU B:260 , ASN B:289 , GKR B:502 , HOH B:619
BINDING SITE FOR RESIDUE MG B 501
3
AC3
SOFTWARE
ASN A:27 , HIS A:32 , THR A:103 , TYR A:150 , PHE A:152 , LYS A:205 , LYS A:207 , ASP A:235 , ASN A:237 , GLU A:260 , ASN A:289 , SER A:340 , LEU A:341 , HIS A:368 , ARG A:422 , MG A:498 , HOH A:624
BINDING SITE FOR RESIDUE GKR A 499
4
AC4
SOFTWARE
ASN B:27 , HIS B:32 , THR B:103 , TYR B:150 , PHE B:152 , LYS B:205 , LYS B:207 , ASP B:235 , ASN B:237 , GLU B:260 , ASN B:289 , HIS B:339 , SER B:340 , LEU B:341 , HIS B:368 , ARG B:422 , MG B:501 , HOH B:619
BINDING SITE FOR RESIDUE GKR B 502
5
AC5
SOFTWARE
GLY A:299 , LEU A:302 , SER A:303 , PHE A:332
BINDING SITE FOR RESIDUE IPA A 601
6
AC6
SOFTWARE
GLY B:299 , LEU B:302 , SER B:303
BINDING SITE FOR RESIDUE IPA B 602
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1jcta2 (A:4-137)
1b: SCOP_d1jctb2 (B:5-137)
2a: SCOP_d1jcta1 (A:138-446)
2b: SCOP_d1jctb1 (B:138-446)
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)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Enolase N-terminal domain-like
(211)
Superfamily
:
Enolase N-terminal domain-like
(211)
Family
:
Enolase N-terminal domain-like
(88)
Protein domain
:
D-glucarate dehydratase
(8)
Escherichia coli [TaxId: 562]
(7)
1a
d1jcta2
A:4-137
1b
d1jctb2
B:5-137
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Enolase C-terminal domain-like
(212)
Family
:
D-glucarate dehydratase-like
(65)
Protein domain
:
D-glucarate dehydratase
(8)
Escherichia coli [TaxId: 562]
(7)
2a
d1jcta1
A:138-446
2b
d1jctb1
B:138-446
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1jctA01 (A:6-137,A:399-416)
1b: CATH_1jctB01 (B:6-137,B:399-416)
2a: CATH_1jctA02 (A:138-398)
2b: CATH_1jctB02 (B:138-398)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Enolase-like; domain 1
(252)
Homologous Superfamily
:
Enolase-like, N-terminal domain
(130)
Escherichia coli. Organism_taxid: 562.
(10)
1a
1jctA01
A:6-137,A:399-416
1b
1jctB01
B:6-137,B:399-416
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Enolase superfamily
(142)
Escherichia coli. Organism_taxid: 562.
(10)
2a
1jctA02
A:138-398
2b
1jctB02
B:138-398
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Pfam Domains
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Asym.Unit (145 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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