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1JCN
Biol. Unit 3
Info
Asym.Unit (133 KB)
Biol.Unit 1 (251 KB)
Biol.Unit 2 (250 KB)
Biol.Unit 3 (497 KB)
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(1)
Title
:
BINARY COMPLEX OF HUMAN TYPE-I INOSINE MONOPHOSPHATE DEHYDROGENASE WITH 6-CL-IMP
Authors
:
D. Risal, M. D. Strickler, B. M. Goldstein
Date
:
11 Jun 01 (Deposition) - 17 Jun 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (4x)
Biol. Unit 2: B (4x)
Biol. Unit 3: A,B (4x)
Keywords
:
Dehydrogenase, Impd, Impdh, Guanine Nucleotide Synthesis, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Risal, M. D. Strickler, B. M. Goldstein
Crystal Structure Of The Human Type I Inosine Monophosphate Dehydrogenase And Implications For Isoform Specificity
To Be Published
[
close entry info
]
Hetero Components
(1, 8)
Info
All Hetero Components
1a: 6-CHLOROPURINE RIBOSIDE, 5'-MONOPH... (CPRa)
1b: 6-CHLOROPURINE RIBOSIDE, 5'-MONOPH... (CPRb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CPR
8
Ligand/Ion
6-CHLOROPURINE RIBOSIDE, 5'-MONOPHOSPHATE
[
close Hetero Component info
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:68 , ARG A:322 , GLY A:328 , SER A:329 , CYS A:331 , GLN A:334 , ASP A:364 , GLY A:365 , GLY A:366 , MET A:385 , GLY A:387 , SER A:388 , HOH A:676 , HOH A:698 , HOH A:734 , HOH A:748
BINDING SITE FOR RESIDUE CPR A 631
2
AC2
SOFTWARE
SER B:68 , MET B:70 , ARG B:322 , GLY B:328 , SER B:329 , CYS B:331 , GLN B:334 , ASP B:364 , GLY B:365 , GLY B:366 , MET B:385 , GLY B:387 , SER B:388 , HOH B:639 , HOH B:689 , HOH B:698 , HOH B:716 , HOH B:734
BINDING SITE FOR RESIDUE CPR B 631
[
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SAPs(SNPs)/Variants
(9, 72)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_065616 (R105W, chain A/B, )
2: VAR_065617 (T116M, chain A/B, )
3: VAR_065618 (N198K, chain A/B, )
4: VAR_017031 (R224P, chain A/B, )
5: VAR_017032 (D226N, chain A/B, )
6: VAR_017033 (V268I, chain A/B, )
7: VAR_065619 (A285T, chain A/B, )
8: VAR_065620 (G324D, chain A/B, )
9: VAR_065621 (H372P, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_065616
R
105
W
IMDH1_HUMAN
Disease (LCA11)
---
A/B
R
105
W
2
UniProt
VAR_065617
T
116
M
IMDH1_HUMAN
Disease (RP10)
---
A/B
T
116
M
3
UniProt
VAR_065618
N
198
K
IMDH1_HUMAN
Disease (LCA11)
---
A/B
N
198
K
4
UniProt
VAR_017031
R
224
P
IMDH1_HUMAN
Disease (RP10)
---
A/B
R
224
P
5
UniProt
VAR_017032
D
226
N
IMDH1_HUMAN
Disease (RP10)
---
A/B
D
226
N
6
UniProt
VAR_017033
V
268
I
IMDH1_HUMAN
Disease (RP10)
---
A/B
V
268
I
7
UniProt
VAR_065619
A
285
T
IMDH1_HUMAN
Polymorphism
---
A/B
A
285
T
8
UniProt
VAR_065620
G
324
D
IMDH1_HUMAN
Unclassified
---
A/B
G
324
D
9
UniProt
VAR_065621
H
372
P
IMDH1_HUMAN
Disease (RP10)
---
A/B
H
372
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 24)
Info
All PROSITE Patterns/Profiles
1: CBS (A:114-164,A:181-237,B:181-237)
2: IMP_DH_GMP_RED (A:321-333,B:321-333)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CBS
PS51371
CBS domain profile.
IMDH1_HUMAN
114-173
179-237
16
A:114-164
B:114-164
A:181-237
B:181-237
2
IMP_DH_GMP_RED
PS00487
IMP dehydrogenase / GMP reductase signature.
IMDH1_HUMAN
321-333
8
A:321-333
B:321-333
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1jcna4 (A:112-231)
1b: SCOP_d1jcnb4 (B:112-231)
2a: SCOP_d1jcna1 (A:10-111,A:232-499)
2b: SCOP_d1jcnb1 (B:10-111,B:232-499)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
CBS-domain pair
(75)
Superfamily
:
CBS-domain pair
(75)
Family
:
CBS-domain pair
(50)
Protein domain
:
Type II inosine monophosphate dehydrogenase CBS domains
(6)
Human (Homo sapiens), type I [TaxId: 9606]
(1)
1a
d1jcna4
A:112-231
1b
d1jcnb4
B:112-231
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Inosine monophosphate dehydrogenase (IMPDH)
(29)
Family
:
Inosine monophosphate dehydrogenase (IMPDH)
(18)
Protein domain
:
Inosine monophosphate dehydrogenase (IMPDH)
(18)
Human (Homo sapiens), type I [TaxId: 9606]
(1)
2a
d1jcna1
A:10-111,A:232-499
2b
d1jcnb1
B:10-111,B:232-499
[
close SCOP info
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1jcnA00 (A:10-499)
1b: CATH_1jcnB00 (B:10-499)
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)
Organisms
(
)
(
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Human (Homo sapiens)
(78)
1a
1jcnA00
A:10-499
1b
1jcnB00
B:10-499
[
close CATH info
]
Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_IMPDH_1jcnB01 (B:28-499)
1b: PFAM_IMPDH_1jcnB02 (B:28-499)
2a: PFAM_CBS_1jcnB03 (B:181-232)
2b: PFAM_CBS_1jcnB04 (B:181-232)
2c: PFAM_CBS_1jcnB05 (B:181-232)
2d: PFAM_CBS_1jcnB06 (B:181-232)
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)
Clan
:
TIM_barrel
(694)
Family
:
IMPDH
(16)
Homo sapiens (Human)
(3)
1a
IMPDH-1jcnB01
B:28-499
1b
IMPDH-1jcnB02
B:28-499
Clan
:
no clan defined [family: CBS]
(51)
Family
:
CBS
(51)
Homo sapiens (Human)
(7)
2a
CBS-1jcnB03
B:181-232
2b
CBS-1jcnB04
B:181-232
2c
CBS-1jcnB05
B:181-232
2d
CBS-1jcnB06
B:181-232
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Asym.Unit (133 KB)
Header - Asym.Unit
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Biol.Unit 3 (497 KB)
Header - Biol.Unit 3
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