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1JCH
Biol. Unit 3
Info
Asym.Unit (194 KB)
Biol.Unit 1 (186 KB)
Biol.Unit 2 (95 KB)
Biol.Unit 3 (95 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF COLICIN E3 IN COMPLEX WITH ITS IMMUNITY PROTEIN
Authors
:
S. Soelaiman, K. Jakes, N. Wu, C. Li, M. Shoham
Date
:
09 Jun 01 (Deposition) - 30 Nov 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.02
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: A,B (1x)
Biol. Unit 3: C,D (1x)
Keywords
:
Translocation Domain Is A Beta-Jellyroll, The Receptor-Binding Domain Is A Coiled Coil, The Rnase Domain Is A Six-Stranded Antiparallel Beta-Sheet. The Immunity Protein Is A Four-Stranded Antiparallel Beta Sheet Flanked By 3 Helices On One Side Of The Sheet, Ribosome Inhibitor, Hydrolase
(Keyword Search:
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Reference
:
S. Soelaiman, K. Jakes, N. Wu, C. Li, M. Shoham
Crystal Structure Of Colicin E3: Implications For Cell Entr And Ribosome Inactivation.
Mol. Cell V. 8 1053 2001
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: CITRIC ACID (CITa)
1b: CITRIC ACID (CITb)
1c: CITRIC ACID (CITc)
1d: CITRIC ACID (CITd)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CIT
2
Ligand/Ion
CITRIC ACID
2
GOL
2
Ligand/Ion
GLYCEROL
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Sites
(5, 5)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC5 (SOFTWARE)
4: AC7 (SOFTWARE)
5: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
ARG C:545 , ASN C:546 , ILE C:547 , LYS C:549 , HOH C:917 , HOH C:5925
BINDING SITE FOR RESIDUE CIT C 5601
2
AC4
SOFTWARE
GLN C:512 , HIS C:513 , HOH C:980 , HOH C:5922 , HOH C:5983
BINDING SITE FOR RESIDUE CIT C 5602
3
AC5
SOFTWARE
PHE A:378 , VAL C:139 , LEU C:140 , ASP C:187
BINDING SITE FOR RESIDUE GOL C 701
4
AC7
SOFTWARE
VAL A:139 , LEU A:140 , ASP A:187 , PHE C:378
BINDING SITE FOR RESIDUE GOL A 5701
5
AC8
SOFTWARE
LYS C:458 , GLY D:1 , ASP D:27 , TYR D:79 , ASP D:81 , GLY D:82
BINDING SITE FOR RESIDUE GOL D 5702
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(4, 8)
Info
All SCOP Domains
1a: SCOP_d1jcha2 (A:84-315)
1b: SCOP_d1jchc2 (C:84-315)
2a: SCOP_d1jcha1 (A:455-551)
2b: SCOP_d1jchc1 (C:455-551)
3a: SCOP_d1jchb_ (B:)
3b: SCOP_d1jchd_ (D:)
4a: SCOP_d1jcha3 (A:316-454)
4b: SCOP_d1jchc3 (C:316-454)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Cloacin translocation domain
(3)
Superfamily
:
Cloacin translocation domain
(3)
Family
:
Cloacin translocation domain
(3)
Protein domain
:
Colicin E3 N-terminal domain
(2)
Escherichia coli [TaxId: 562]
(2)
1a
d1jcha2
A:84-315
1b
d1jchc2
C:84-315
Fold
:
Ribonuclease domain of colicin E3
(3)
Superfamily
:
Ribonuclease domain of colicin E3
(3)
Family
:
Ribonuclease domain of colicin E3
(3)
Protein domain
:
Ribonuclease domain of colicin E3
(3)
Escherichia coli [TaxId: 562]
(3)
2a
d1jcha1
A:455-551
2b
d1jchc1
C:455-551
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FKBP-like
(309)
Superfamily
:
Colicin E3 immunity protein
(4)
Family
:
Colicin E3 immunity protein
(4)
Protein domain
:
Colicin E3 immunity protein
(4)
Escherichia coli [TaxId: 562]
(4)
3a
d1jchb_
B:
3b
d1jchd_
D:
Class
:
Coiled coil proteins
(689)
Fold
:
Antiparallel coiled-coil
(45)
Superfamily
:
Colicin E3 receptor domain
(4)
Family
:
Colicin E3 receptor domain
(4)
Protein domain
:
Colicin E3 receptor domain
(4)
Escherichia coli [TaxId: 562]
(4)
4a
d1jcha3
A:316-454
4b
d1jchc3
C:316-454
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1jchB00 (B:1-84)
1b: CATH_1jchD00 (D:1-84)
2a: CATH_1jchA03 (A:454-551)
2b: CATH_1jchC03 (C:454-551)
3a: CATH_1jchA02 (A:293-453)
3b: CATH_1jchC02 (C:293-453)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Chitinase A; domain 3
(225)
Homologous Superfamily
:
[code=3.10.50.20, no name defined]
(4)
K12 substr (Escherichia coli str)
(2)
1a
1jchB00
B:1-84
1b
1jchD00
D:1-84
Topology
:
Ribonuclease domain of colicin e3 (Residues 456-551)
(4)
Homologous Superfamily
:
Ribonuclease domain of colicin e3 (Residues 456-551)
(4)
K12 substr (Escherichia coli str)
(1)
2a
1jchA03
A:454-551
2b
1jchC03
C:454-551
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Helix Hairpins
(718)
Homologous Superfamily
:
Helix Hairpins
(4)
K12 substr (Escherichia coli str)
(1)
3a
1jchA02
A:293-453
3b
1jchC02
C:293-453
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Pfam Domains
(4, 8)
Info
all PFAM domains
1a: PFAM_Pyocin_S_1jchC01 (C:171-286)
1b: PFAM_Pyocin_S_1jchC02 (C:171-286)
2a: PFAM_Cloacin_immun_1jchD01 (D:1-82)
2b: PFAM_Cloacin_immun_1jchD02 (D:1-82)
3a: PFAM_Cytotoxic_1jchC03 (C:464-551)
3b: PFAM_Cytotoxic_1jchC04 (C:464-551)
4a: PFAM_E2R135_1jchC05 (C:314-447)
4b: PFAM_E2R135_1jchC06 (C:314-447)
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Clans
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(
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(
)
Organisms
(
)
(
)
Clan
:
Bacteriocin_TLN
(3)
Family
:
Pyocin_S
(1)
Escherichia coli
(1)
1a
Pyocin_S-1jchC01
C:171-286
1b
Pyocin_S-1jchC02
C:171-286
Clan
:
no clan defined [family: Cloacin_immun]
(1)
Family
:
Cloacin_immun
(1)
Escherichia coli
(1)
2a
Cloacin_immun-1jchD01
D:1-82
2b
Cloacin_immun-1jchD02
D:1-82
Clan
:
no clan defined [family: Cytotoxic]
(1)
Family
:
Cytotoxic
(1)
Escherichia coli
(1)
3a
Cytotoxic-1jchC03
C:464-551
3b
Cytotoxic-1jchC04
C:464-551
Clan
:
no clan defined [family: E2R135]
(3)
Family
:
E2R135
(3)
Escherichia coli
(3)
4a
E2R135-1jchC05
C:314-447
4b
E2R135-1jchC06
C:314-447
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Asymmetric Unit 1
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Asym.Unit (194 KB)
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