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Getting 'PROSITE' information from database.
1JBQ
Biol. Unit 2
Info
Asym.Unit (350 KB)
Biol.Unit 1 (117 KB)
Biol.Unit 2 (117 KB)
Biol.Unit 3 (118 KB)
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Title
:
STRUCTURE OF HUMAN CYSTATHIONINE BETA-SYNTHASE: A UNIQUE PYRIDOXAL 5'-PHOSPHATE DEPENDENT HEMEPROTEIN
Authors
:
M. Meier, M. Janosik, V. Kery, J. P. Kraus, P. Burkhard
Date
:
06 Jun 01 (Deposition) - 12 Aug 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Fold Type Ii Of Plp Enzymes, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Meier, M. Janosik, V. Kery, J. P. Kraus, P. Burkhard
Structure Of Human Cystathionine Beta-Synthase: A Unique Pyridoxal 5'-Phosphate-Dependent Heme Protein.
Embo J. V. 20 3910 2001
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 4)
Info
All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
1b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
1c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
1d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
1e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
1f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
2a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
2b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
2c: PYRIDOXAL-5'-PHOSPHATE (PLPc)
2d: PYRIDOXAL-5'-PHOSPHATE (PLPd)
2e: PYRIDOXAL-5'-PHOSPHATE (PLPe)
2f: PYRIDOXAL-5'-PHOSPHATE (PLPf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
2
PLP
2
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC9 (SOFTWARE)
4: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
SER C:50 , ARG C:51 , CYS C:52 , THR C:53 , TRP C:54 , GLU C:62 , SER C:63 , PRO C:64 , HIS C:65 , ARG C:224 , ALA C:226 , PRO C:229 , LEU C:230 , TYR C:233 , ARG C:266 , THR D:53 , ARG D:58 , HEM D:501
BINDING SITE FOR RESIDUE HEM C 501
2
AC4
SOFTWARE
THR C:53 , ARG C:58 , HEM C:501 , HOH C:1004 , SER D:50 , ARG D:51 , CYS D:52 , THR D:53 , TRP D:54 , GLU D:62 , PRO D:64 , HIS D:65 , ARG D:224 , ALA D:226 , PRO D:229 , LEU D:230 , TYR D:233 , ARG D:266
BINDING SITE FOR RESIDUE HEM D 501
3
AC9
SOFTWARE
LYS C:119 , ASN C:149 , SER C:254 , VAL C:255 , GLY C:256 , THR C:257 , GLY C:258 , GLY C:259 , THR C:260 , GLU C:304 , GLY C:305 , ILE C:306 , SER C:349 , PRO C:375 , ASP C:376 , TYR C:381 , HOH C:1006 , HOH C:1024 , HOH C:1025
BINDING SITE FOR RESIDUE PLP C 1001
4
BC1
SOFTWARE
LYS D:119 , ASN D:149 , SER D:254 , VAL D:255 , GLY D:256 , THR D:257 , GLY D:258 , GLY D:259 , THR D:260 , GLY D:305 , ILE D:306 , SER D:349 , PRO D:375 , ASP D:376 , TYR D:381 , HOH D:1023 , HOH D:1024
BINDING SITE FOR RESIDUE PLP D 1001
[
close Site info
]
SAPs(SNPs)/Variants
(85, 170)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_008049 (P49L, chain C/D, )
02: VAR_008050 (R58W, chain C/D, )
03: VAR_021790 (H65R, chain C/D, )
04: VAR_046922 (A69P, chain C/D, )
05: VAR_002171 (P78R, chain C/D, )
06: VAR_008051 (G85R, chain C/D, )
07: VAR_002172 (P88S, chain C/D, )
08: VAR_021791 (L101P, chain C/D, )
09: VAR_002173 (K102N, chain C/D, )
10: VAR_008052 (K102Q, chain C/D, )
11: VAR_021792 (C109R, chain C/D, )
12: VAR_002174 (A114V, chain C/D, )
13: VAR_008053 (G116R, chain C/D, )
14: VAR_008054 (R121C, chain C/D, )
15: VAR_008055 (R121H, chain C/D, )
16: VAR_008056 (R121L, chain C/D, )
17: VAR_046923 (R125P, chain C/D, )
18: VAR_002175 (R125Q, chain C/D, )
19: VAR_008057 (R125W, chain C/D, )
20: VAR_008058 (M126V, chain C/D, )
21: VAR_008059 (E128D, chain C/D, )
22: VAR_002176 (E131D, chain C/D, )
23: VAR_008060 (G139R, chain C/D, )
24: VAR_021793 (I143M, chain C/D, )
25: VAR_002177 (E144K, chain C/D, )
26: VAR_002178 (P145L, chain C/D, )
27: VAR_008061 (G148R, chain C/D, )
28: VAR_008062 (G151R, chain C/D, )
29: VAR_008064 (I152M, chain C/D, )
30: VAR_046924 (L154Q, chain C/D, )
31: VAR_008065 (A155T, chain C/D, )
32: VAR_046925 (A155V, chain C/D, )
33: VAR_002179 (C165Y, chain C/D, )
34: VAR_046926 (V168A, chain C/D, )
35: VAR_002180 (V168M, chain C/D, )
36: VAR_046927 (M173V, chain C/D, )
37: VAR_008066 (E176K, chain C/D, )
38: VAR_008067 (V180A, chain C/D, )
39: VAR_008068 (T191M, chain C/D, )
40: VAR_002181 (R224H, chain C/D, )
41: VAR_008070 (A226T, chain C/D, )
42: VAR_021794 (N228K, chain C/D, )
43: VAR_046928 (N228S, chain C/D, )
44: VAR_046929 (A231P, chain C/D, )
45: VAR_008071 (D234N, chain C/D, )
46: VAR_002182 (E239K, chain C/D, )
47: VAR_002183 (T257M, chain C/D, )
48: VAR_008072 (T262M, chain C/D, )
49: VAR_021795 (T262R, chain C/D, )
50: VAR_008073 (R266G, chain C/D, )
51: VAR_008074 (R266K, chain C/D, )
52: VAR_021796 (C275Y, chain C/D, )
53: VAR_066100 (I278S, chain C/D, )
54: VAR_002184 (I278T, chain C/D, )
55: VAR_066101 (D281N, chain C/D, )
56: VAR_046932 (A288P, chain C/D, )
57: VAR_046933 (A288T, chain C/D, )
58: VAR_002185 (P290L, chain C/D, )
59: VAR_008076 (E302K, chain C/D, )
60: VAR_008077 (G305R, chain C/D, )
61: VAR_002186 (G307S, chain C/D, )
62: VAR_008078 (V320A, chain C/D, )
63: VAR_066102 (D321V, chain C/D, )
64: VAR_008079 (A331E, chain C/D, )
65: VAR_002187 (A331V, chain C/D, )
66: VAR_002188 (R336C, chain C/D, )
67: VAR_008080 (R336H, chain C/D, )
68: VAR_021797 (L338P, chain C/D, )
69: VAR_021798 (G347S, chain C/D, )
70: VAR_021799 (S349N, chain C/D, )
71: VAR_008081 (S352N, chain C/D, )
72: VAR_008082 (T353M, chain C/D, )
73: VAR_008083 (V354M, chain C/D, )
74: VAR_021800 (A355P, chain C/D, )
75: VAR_046934 (A361T, chain C/D, )
76: VAR_008084 (R369C, chain C/D, )
77: VAR_002189 (R369H, chain C/D, )
78: VAR_008085 (C370Y, chain C/D, )
79: VAR_002190 (V371M, chain C/D, )
80: VAR_046935 (D376N, chain C/D, )
81: VAR_021801 (R379Q, chain C/D, )
82: VAR_046936 (R379W, chain C/D, )
83: VAR_002191 (K384E, chain C/D, )
84: VAR_008086 (K384N, chain C/D, )
85: VAR_008087 (M391I, chain C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_008049
P
49
L
CBS_HUMAN
Disease (CBSD)
---
C/D
P
49
L
02
UniProt
VAR_008050
R
58
W
CBS_HUMAN
Disease (CBSD)
---
C/D
R
58
W
03
UniProt
VAR_021790
H
65
R
CBS_HUMAN
Disease (CBSD)
---
C/D
H
65
R
04
UniProt
VAR_046922
A
69
P
CBS_HUMAN
Polymorphism
17849313
C/D
A
69
P
05
UniProt
VAR_002171
P
78
R
CBS_HUMAN
Disease (CBSD)
---
C/D
P
78
R
06
UniProt
VAR_008051
G
85
R
CBS_HUMAN
Disease (CBSD)
---
C/D
G
85
R
07
UniProt
VAR_002172
P
88
S
CBS_HUMAN
Disease (CBSD)
---
C/D
P
88
S
08
UniProt
VAR_021791
L
101
P
CBS_HUMAN
Disease (CBSD)
---
C/D
L
101
P
09
UniProt
VAR_002173
K
102
N
CBS_HUMAN
Disease (CBSD)
---
C/D
K
102
N
10
UniProt
VAR_008052
K
102
Q
CBS_HUMAN
Disease (CBSD)
34040148
C/D
K
102
Q
11
UniProt
VAR_021792
C
109
R
CBS_HUMAN
Disease (CBSD)
---
C/D
C
109
R
12
UniProt
VAR_002174
A
114
V
CBS_HUMAN
Disease (CBSD)
---
C/D
A
114
V
13
UniProt
VAR_008053
G
116
R
CBS_HUMAN
Disease (CBSD)
---
C/D
G
116
R
14
UniProt
VAR_008054
R
121
C
CBS_HUMAN
Disease (CBSD)
---
C/D
R
121
C
15
UniProt
VAR_008055
R
121
H
CBS_HUMAN
Disease (CBSD)
---
C/D
R
121
H
16
UniProt
VAR_008056
R
121
L
CBS_HUMAN
Disease (CBSD)
---
C/D
R
121
L
17
UniProt
VAR_046923
R
125
P
CBS_HUMAN
Disease (CBSD)
---
C/D
R
125
P
18
UniProt
VAR_002175
R
125
Q
CBS_HUMAN
Disease (CBSD)
---
C/D
R
125
Q
19
UniProt
VAR_008057
R
125
W
CBS_HUMAN
Disease (CBSD)
---
C/D
R
125
W
20
UniProt
VAR_008058
M
126
V
CBS_HUMAN
Disease (CBSD)
---
C/D
M
126
V
21
UniProt
VAR_008059
E
128
D
CBS_HUMAN
Disease (CBSD)
---
C/D
E
128
D
22
UniProt
VAR_002176
E
131
D
CBS_HUMAN
Disease (CBSD)
---
C/D
E
131
D
23
UniProt
VAR_008060
G
139
R
CBS_HUMAN
Disease (CBSD)
---
C/D
G
139
R
24
UniProt
VAR_021793
I
143
M
CBS_HUMAN
Disease (CBSD)
---
C/D
I
143
M
25
UniProt
VAR_002177
E
144
K
CBS_HUMAN
Disease (CBSD)
---
C/D
E
144
K
26
UniProt
VAR_002178
P
145
L
CBS_HUMAN
Disease (CBSD)
---
C/D
P
145
L
27
UniProt
VAR_008061
G
148
R
CBS_HUMAN
Disease (CBSD)
---
C/D
G
148
R
28
UniProt
VAR_008062
G
151
R
CBS_HUMAN
Disease (CBSD)
---
C/D
G
151
R
29
UniProt
VAR_008064
I
152
M
CBS_HUMAN
Disease (CBSD)
---
C/D
I
152
M
30
UniProt
VAR_046924
L
154
Q
CBS_HUMAN
Disease (CBSD)
---
C/D
L
154
Q
31
UniProt
VAR_008065
A
155
T
CBS_HUMAN
Disease (CBSD)
---
C/D
A
155
T
32
UniProt
VAR_046925
A
155
V
CBS_HUMAN
Disease (CBSD)
---
C/D
A
155
V
33
UniProt
VAR_002179
C
165
Y
CBS_HUMAN
Disease (CBSD)
---
C/D
C
165
Y
34
UniProt
VAR_046926
V
168
A
CBS_HUMAN
Disease (CBSD)
---
C/D
V
168
A
35
UniProt
VAR_002180
V
168
M
CBS_HUMAN
Disease (CBSD)
---
C/D
V
168
M
36
UniProt
VAR_046927
M
173
V
CBS_HUMAN
Disease (CBSD)
---
C/D
M
173
V
37
UniProt
VAR_008066
E
176
K
CBS_HUMAN
Disease (CBSD)
---
C/D
E
176
K
38
UniProt
VAR_008067
V
180
A
CBS_HUMAN
Disease (CBSD)
---
C/D
V
180
A
39
UniProt
VAR_008068
T
191
M
CBS_HUMAN
Disease (CBSD)
---
C/D
T
191
M
40
UniProt
VAR_002181
R
224
H
CBS_HUMAN
Disease (CBSD)
---
C/D
R
224
H
41
UniProt
VAR_008070
A
226
T
CBS_HUMAN
Disease (CBSD)
---
C/D
A
226
T
42
UniProt
VAR_021794
N
228
K
CBS_HUMAN
Disease (CBSD)
---
C/D
N
228
K
43
UniProt
VAR_046928
N
228
S
CBS_HUMAN
Disease (CBSD)
---
C/D
N
228
S
44
UniProt
VAR_046929
A
231
P
CBS_HUMAN
Disease (CBSD)
---
C/D
A
231
P
45
UniProt
VAR_008071
D
234
N
CBS_HUMAN
Disease (CBSD)
---
C/D
D
234
N
46
UniProt
VAR_002182
E
239
K
CBS_HUMAN
Disease (CBSD)
---
C/D
E
239
K
47
UniProt
VAR_002183
T
257
M
CBS_HUMAN
Disease (CBSD)
---
C/D
T
257
M
48
UniProt
VAR_008072
T
262
M
CBS_HUMAN
Disease (CBSD)
---
C/D
T
262
M
49
UniProt
VAR_021795
T
262
R
CBS_HUMAN
Disease (CBSD)
---
C/D
T
262
R
50
UniProt
VAR_008073
R
266
G
CBS_HUMAN
Disease (CBSD)
---
C/D
R
266
G
51
UniProt
VAR_008074
R
266
K
CBS_HUMAN
Disease (CBSD)
28934275
C/D
R
266
K
52
UniProt
VAR_021796
C
275
Y
CBS_HUMAN
Disease (CBSD)
---
C/D
C
275
Y
53
UniProt
VAR_066100
I
278
S
CBS_HUMAN
Disease (CBSD)
---
C/D
I
278
S
54
UniProt
VAR_002184
I
278
T
CBS_HUMAN
Disease (CBSD)
5742905
C/D
I
278
T
55
UniProt
VAR_066101
D
281
N
CBS_HUMAN
Disease (CBSD)
---
C/D
D
281
N
56
UniProt
VAR_046932
A
288
P
CBS_HUMAN
Disease (CBSD)
---
C/D
A
288
P
57
UniProt
VAR_046933
A
288
T
CBS_HUMAN
Disease (CBSD)
---
C/D
A
288
T
58
UniProt
VAR_002185
P
290
L
CBS_HUMAN
Disease (CBSD)
---
C/D
P
290
L
59
UniProt
VAR_008076
E
302
K
CBS_HUMAN
Disease (CBSD)
---
C/D
E
302
K
60
UniProt
VAR_008077
G
305
R
CBS_HUMAN
Disease (CBSD)
---
C/D
G
305
R
61
UniProt
VAR_002186
G
307
S
CBS_HUMAN
Disease (CBSD)
---
C/D
G
307
S
62
UniProt
VAR_008078
V
320
A
CBS_HUMAN
Disease (CBSD)
---
C/D
V
320
A
63
UniProt
VAR_066102
D
321
V
CBS_HUMAN
Disease (CBSD)
---
C/D
D
321
V
64
UniProt
VAR_008079
A
331
E
CBS_HUMAN
Disease (CBSD)
---
C/D
A
331
E
65
UniProt
VAR_002187
A
331
V
CBS_HUMAN
Disease (CBSD)
---
C/D
A
331
V
66
UniProt
VAR_002188
R
336
C
CBS_HUMAN
Disease (CBSD)
---
C/D
R
336
C
67
UniProt
VAR_008080
R
336
H
CBS_HUMAN
Disease (CBSD)
---
C/D
R
336
H
68
UniProt
VAR_021797
L
338
P
CBS_HUMAN
Disease (CBSD)
---
C/D
L
338
P
69
UniProt
VAR_021798
G
347
S
CBS_HUMAN
Disease (CBSD)
---
C/D
G
347
S
70
UniProt
VAR_021799
S
349
N
CBS_HUMAN
Disease (CBSD)
---
C/D
S
349
N
71
UniProt
VAR_008081
S
352
N
CBS_HUMAN
Disease (CBSD)
---
C/D
S
352
N
72
UniProt
VAR_008082
T
353
M
CBS_HUMAN
Disease (CBSD)
---
C/D
T
353
M
73
UniProt
VAR_008083
V
354
M
CBS_HUMAN
Disease (CBSD)
---
C/D
V
354
M
74
UniProt
VAR_021800
A
355
P
CBS_HUMAN
Disease (CBSD)
---
C/D
A
355
P
75
UniProt
VAR_046934
A
361
T
CBS_HUMAN
Disease (CBSD)
---
C/D
A
361
T
76
UniProt
VAR_008084
R
369
C
CBS_HUMAN
Disease (CBSD)
117687681
C/D
R
369
C
77
UniProt
VAR_002189
R
369
H
CBS_HUMAN
Disease (CBSD)
11700812
C/D
R
369
H
78
UniProt
VAR_008085
C
370
Y
CBS_HUMAN
Disease (CBSD)
---
C/D
C
370
Y
79
UniProt
VAR_002190
V
371
M
CBS_HUMAN
Disease (CBSD)
---
C/D
V
371
M
80
UniProt
VAR_046935
D
376
N
CBS_HUMAN
Disease (CBSD)
---
C/D
D
376
N
81
UniProt
VAR_021801
R
379
Q
CBS_HUMAN
Disease (CBSD)
---
C/D
R
379
Q
82
UniProt
VAR_046936
R
379
W
CBS_HUMAN
Disease (CBSD)
---
C/D
R
379
W
83
UniProt
VAR_002191
K
384
E
CBS_HUMAN
Disease (CBSD)
---
C/D
K
384
E
84
UniProt
VAR_008086
K
384
N
CBS_HUMAN
Disease (CBSD)
---
C/D
K
384
N
85
UniProt
VAR_008087
M
391
I
CBS_HUMAN
Disease (CBSD)
---
C/D
M
391
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: CYS_SYNTHASE (C:108-126,D:108-126)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYS_SYNTHASE
PS00901
Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site.
CBS_HUMAN
108-126
2
-
-
C:108-126
D:108-126
-
-
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Exons
(0, 0)
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SCOP Domains
(1, 6)
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All SCOP Domains
1a: SCOP_d1jbqa_ (A:)
1b: SCOP_d1jbqb_ (B:)
1c: SCOP_d1jbqc_ (C:)
1d: SCOP_d1jbqd_ (D:)
1e: SCOP_d1jbqe_ (E:)
1f: SCOP_d1jbqf_ (F:)
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Tryptophan synthase beta subunit-like PLP-dependent enzymes
(165)
Superfamily
:
Tryptophan synthase beta subunit-like PLP-dependent enzymes
(165)
Family
:
Tryptophan synthase beta subunit-like PLP-dependent enzymes
(120)
Protein domain
:
Cystathionine beta-synthase
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1jbqa_
A:
1b
d1jbqb_
B:
1c
d1jbqc_
C:
1d
d1jbqd_
D:
1e
d1jbqe_
E:
1f
d1jbqf_
F:
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CATH Domains
(1, 12)
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all CATH domains
1a: CATH_1jbqA01 (A:74-112,A:236-390)
1b: CATH_1jbqB01 (B:74-112,B:236-390)
1c: CATH_1jbqA02 (A:113-222)
1d: CATH_1jbqB02 (B:113-222)
1e: CATH_1jbqC02 (C:113-222)
1f: CATH_1jbqD02 (D:113-222)
1g: CATH_1jbqE02 (E:113-222)
1h: CATH_1jbqF02 (F:113-222)
1i: CATH_1jbqC01 (C:74-112,C:236-390)
1j: CATH_1jbqD01 (D:74-112,D:236-390)
1k: CATH_1jbqE01 (E:74-112,E:236-390)
1l: CATH_1jbqF01 (F:74-112,F:236-390)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1100, no name defined]
(77)
Human (Homo sapiens)
(4)
1a
1jbqA01
A:74-112,A:236-390
1b
1jbqB01
B:74-112,B:236-390
1c
1jbqA02
A:113-222
1d
1jbqB02
B:113-222
1e
1jbqC02
C:113-222
1f
1jbqD02
D:113-222
1g
1jbqE02
E:113-222
1h
1jbqF02
F:113-222
1i
1jbqC01
C:74-112,C:236-390
1j
1jbqD01
D:74-112,D:236-390
1k
1jbqE01
E:74-112,E:236-390
1l
1jbqF01
F:74-112,F:236-390
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Pfam Domains
(1, 6)
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all PFAM domains
1a: PFAM_PALP_1jbqF01 (F:80-376)
1b: PFAM_PALP_1jbqF02 (F:80-376)
1c: PFAM_PALP_1jbqF03 (F:80-376)
1d: PFAM_PALP_1jbqF04 (F:80-376)
1e: PFAM_PALP_1jbqF05 (F:80-376)
1f: PFAM_PALP_1jbqF06 (F:80-376)
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Clan
:
no clan defined [family: PALP]
(67)
Family
:
PALP
(67)
Homo sapiens (Human)
(6)
1a
PALP-1jbqF01
F:80-376
1b
PALP-1jbqF02
F:80-376
1c
PALP-1jbqF03
F:80-376
1d
PALP-1jbqF04
F:80-376
1e
PALP-1jbqF05
F:80-376
1f
PALP-1jbqF06
F:80-376
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