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1JBQ
Asym. Unit
Info
Asym.Unit (350 KB)
Biol.Unit 1 (117 KB)
Biol.Unit 2 (117 KB)
Biol.Unit 3 (118 KB)
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(1)
Title
:
STRUCTURE OF HUMAN CYSTATHIONINE BETA-SYNTHASE: A UNIQUE PYRIDOXAL 5'-PHOSPHATE DEPENDENT HEMEPROTEIN
Authors
:
M. Meier, M. Janosik, V. Kery, J. P. Kraus, P. Burkhard
Date
:
06 Jun 01 (Deposition) - 12 Aug 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Fold Type Ii Of Plp Enzymes, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Meier, M. Janosik, V. Kery, J. P. Kraus, P. Burkhard
Structure Of Human Cystathionine Beta-Synthase: A Unique Pyridoxal 5'-Phosphate-Dependent Heme Protein.
Embo J. V. 20 3910 2001
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 12)
Info
All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
1b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
1c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
1d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
1e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
1f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
2a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
2b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
2c: PYRIDOXAL-5'-PHOSPHATE (PLPc)
2d: PYRIDOXAL-5'-PHOSPHATE (PLPd)
2e: PYRIDOXAL-5'-PHOSPHATE (PLPe)
2f: PYRIDOXAL-5'-PHOSPHATE (PLPf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
HEM
6
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
2
PLP
6
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
[
close Hetero Component info
]
Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:50 , ARG A:51 , CYS A:52 , THR A:53 , TRP A:54 , GLU A:62 , SER A:63 , PRO A:64 , HIS A:65 , ARG A:224 , ALA A:226 , PRO A:229 , LEU A:230 , TYR A:233 , ARG A:266 , THR B:53 , ARG B:58 , HEM B:501
BINDING SITE FOR RESIDUE HEM A 501
02
AC2
SOFTWARE
THR A:53 , ARG A:58 , HEM A:501 , SER B:50 , ARG B:51 , CYS B:52 , THR B:53 , TRP B:54 , GLU B:62 , PRO B:64 , HIS B:65 , ARG B:224 , ALA B:226 , PRO B:229 , LEU B:230 , TYR B:233 , ARG B:266 , HOH B:1011
BINDING SITE FOR RESIDUE HEM B 501
03
AC3
SOFTWARE
SER C:50 , ARG C:51 , CYS C:52 , THR C:53 , TRP C:54 , GLU C:62 , SER C:63 , PRO C:64 , HIS C:65 , ARG C:224 , ALA C:226 , PRO C:229 , LEU C:230 , TYR C:233 , ARG C:266 , THR D:53 , ARG D:58 , HEM D:501
BINDING SITE FOR RESIDUE HEM C 501
04
AC4
SOFTWARE
THR C:53 , ARG C:58 , HEM C:501 , HOH C:1004 , SER D:50 , ARG D:51 , CYS D:52 , THR D:53 , TRP D:54 , GLU D:62 , PRO D:64 , HIS D:65 , ARG D:224 , ALA D:226 , PRO D:229 , LEU D:230 , TYR D:233 , ARG D:266
BINDING SITE FOR RESIDUE HEM D 501
05
AC5
SOFTWARE
ARG E:51 , CYS E:52 , THR E:53 , TRP E:54 , GLU E:62 , SER E:63 , PRO E:64 , HIS E:65 , ARG E:224 , ALA E:226 , PRO E:229 , LEU E:230 , TYR E:233 , ARG E:266 , THR F:53 , ARG F:58 , HEM F:501
BINDING SITE FOR RESIDUE HEM E 501
06
AC6
SOFTWARE
THR E:53 , ARG E:58 , HEM E:501 , SER F:50 , ARG F:51 , CYS F:52 , THR F:53 , TRP F:54 , GLU F:62 , SER F:63 , PRO F:64 , HIS F:65 , ARG F:224 , ALA F:226 , PRO F:229 , LEU F:230 , TYR F:233 , ARG F:266
BINDING SITE FOR RESIDUE HEM F 501
07
AC7
SOFTWARE
LYS A:119 , ASN A:149 , SER A:254 , VAL A:255 , GLY A:256 , THR A:257 , GLY A:258 , GLY A:259 , THR A:260 , GLY A:305 , ILE A:306 , SER A:349 , PRO A:375 , ASP A:376 , TYR A:381 , HOH A:1020 , HOH A:1021
BINDING SITE FOR RESIDUE PLP A 1001
08
AC8
SOFTWARE
LYS B:119 , ASN B:149 , SER B:254 , VAL B:255 , GLY B:256 , THR B:257 , GLY B:258 , GLY B:259 , THR B:260 , GLY B:305 , ILE B:306 , SER B:349 , PRO B:375 , ASP B:376 , TYR B:381 , HOH B:1029
BINDING SITE FOR RESIDUE PLP B 1001
09
AC9
SOFTWARE
LYS C:119 , ASN C:149 , SER C:254 , VAL C:255 , GLY C:256 , THR C:257 , GLY C:258 , GLY C:259 , THR C:260 , GLU C:304 , GLY C:305 , ILE C:306 , SER C:349 , PRO C:375 , ASP C:376 , TYR C:381 , HOH C:1006 , HOH C:1024 , HOH C:1025
BINDING SITE FOR RESIDUE PLP C 1001
10
BC1
SOFTWARE
LYS D:119 , ASN D:149 , SER D:254 , VAL D:255 , GLY D:256 , THR D:257 , GLY D:258 , GLY D:259 , THR D:260 , GLY D:305 , ILE D:306 , SER D:349 , PRO D:375 , ASP D:376 , TYR D:381 , HOH D:1023 , HOH D:1024
BINDING SITE FOR RESIDUE PLP D 1001
11
BC2
SOFTWARE
LYS E:119 , ASN E:149 , SER E:254 , VAL E:255 , GLY E:256 , THR E:257 , GLY E:258 , GLY E:259 , THR E:260 , GLY E:305 , SER E:349 , PRO E:375 , ASP E:376 , TYR E:381 , HOH E:1006 , HOH E:1028 , HOH E:1029 , HOH E:1030
BINDING SITE FOR RESIDUE PLP E 1001
12
BC3
SOFTWARE
LYS F:119 , ASN F:149 , SER F:254 , VAL F:255 , GLY F:256 , THR F:257 , GLY F:258 , GLY F:259 , THR F:260 , GLY F:305 , ILE F:306 , SER F:349 , PRO F:375 , ASP F:376 , TYR F:381 , HOH F:1020 , HOH F:1021
BINDING SITE FOR RESIDUE PLP F 1001
[
close Site info
]
SAPs(SNPs)/Variants
(85, 510)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_008049 (P49L, chain A/B/C/D/E/F, )
02: VAR_008050 (R58W, chain A/B/C/D/E/F, )
03: VAR_021790 (H65R, chain A/B/C/D/E/F, )
04: VAR_046922 (A69P, chain A/B/C/D/E/F, )
05: VAR_002171 (P78R, chain A/B/C/D/E/F, )
06: VAR_008051 (G85R, chain A/B/C/D/E/F, )
07: VAR_002172 (P88S, chain A/B/C/D/E/F, )
08: VAR_021791 (L101P, chain A/B/C/D/E/F, )
09: VAR_002173 (K102N, chain A/B/C/D/E/F, )
10: VAR_008052 (K102Q, chain A/B/C/D/E/F, )
11: VAR_021792 (C109R, chain A/B/C/D/E/F, )
12: VAR_002174 (A114V, chain A/B/C/D/E/F, )
13: VAR_008053 (G116R, chain A/B/C/D/E/F, )
14: VAR_008054 (R121C, chain A/B/C/D/E/F, )
15: VAR_008055 (R121H, chain A/B/C/D/E/F, )
16: VAR_008056 (R121L, chain A/B/C/D/E/F, )
17: VAR_046923 (R125P, chain A/B/C/D/E/F, )
18: VAR_002175 (R125Q, chain A/B/C/D/E/F, )
19: VAR_008057 (R125W, chain A/B/C/D/E/F, )
20: VAR_008058 (M126V, chain A/B/C/D/E/F, )
21: VAR_008059 (E128D, chain A/B/C/D/E/F, )
22: VAR_002176 (E131D, chain A/B/C/D/E/F, )
23: VAR_008060 (G139R, chain A/B/C/D/E/F, )
24: VAR_021793 (I143M, chain A/B/C/D/E/F, )
25: VAR_002177 (E144K, chain A/B/C/D/E/F, )
26: VAR_002178 (P145L, chain A/B/C/D/E/F, )
27: VAR_008061 (G148R, chain A/B/C/D/E/F, )
28: VAR_008062 (G151R, chain A/B/C/D/E/F, )
29: VAR_008064 (I152M, chain A/B/C/D/E/F, )
30: VAR_046924 (L154Q, chain A/B/C/D/E/F, )
31: VAR_008065 (A155T, chain A/B/C/D/E/F, )
32: VAR_046925 (A155V, chain A/B/C/D/E/F, )
33: VAR_002179 (C165Y, chain A/B/C/D/E/F, )
34: VAR_046926 (V168A, chain A/B/C/D/E/F, )
35: VAR_002180 (V168M, chain A/B/C/D/E/F, )
36: VAR_046927 (M173V, chain A/B/C/D/E/F, )
37: VAR_008066 (E176K, chain A/B/C/D/E/F, )
38: VAR_008067 (V180A, chain A/B/C/D/E/F, )
39: VAR_008068 (T191M, chain A/B/C/D/E/F, )
40: VAR_002181 (R224H, chain A/B/C/D/E/F, )
41: VAR_008070 (A226T, chain A/B/C/D/E/F, )
42: VAR_021794 (N228K, chain A/B/C/D/E/F, )
43: VAR_046928 (N228S, chain A/B/C/D/E/F, )
44: VAR_046929 (A231P, chain A/B/C/D/E/F, )
45: VAR_008071 (D234N, chain A/B/C/D/E/F, )
46: VAR_002182 (E239K, chain A/B/C/D/E/F, )
47: VAR_002183 (T257M, chain A/B/C/D/E/F, )
48: VAR_008072 (T262M, chain A/B/C/D/E/F, )
49: VAR_021795 (T262R, chain A/B/C/D/E/F, )
50: VAR_008073 (R266G, chain A/B/C/D/E/F, )
51: VAR_008074 (R266K, chain A/B/C/D/E/F, )
52: VAR_021796 (C275Y, chain A/B/C/D/E/F, )
53: VAR_066100 (I278S, chain A/B/C/D/E/F, )
54: VAR_002184 (I278T, chain A/B/C/D/E/F, )
55: VAR_066101 (D281N, chain A/B/C/D/E/F, )
56: VAR_046932 (A288P, chain A/B/C/D/E/F, )
57: VAR_046933 (A288T, chain A/B/C/D/E/F, )
58: VAR_002185 (P290L, chain A/B/C/D/E/F, )
59: VAR_008076 (E302K, chain A/B/C/D/E/F, )
60: VAR_008077 (G305R, chain A/B/C/D/E/F, )
61: VAR_002186 (G307S, chain A/B/C/D/E/F, )
62: VAR_008078 (V320A, chain A/B/C/D/E/F, )
63: VAR_066102 (D321V, chain A/B/C/D/E/F, )
64: VAR_008079 (A331E, chain A/B/C/D/E/F, )
65: VAR_002187 (A331V, chain A/B/C/D/E/F, )
66: VAR_002188 (R336C, chain A/B/C/D/E/F, )
67: VAR_008080 (R336H, chain A/B/C/D/E/F, )
68: VAR_021797 (L338P, chain A/B/C/D/E/F, )
69: VAR_021798 (G347S, chain A/B/C/D/E/F, )
70: VAR_021799 (S349N, chain A/B/C/D/E/F, )
71: VAR_008081 (S352N, chain A/B/C/D/E/F, )
72: VAR_008082 (T353M, chain A/B/C/D/E/F, )
73: VAR_008083 (V354M, chain A/B/C/D/E/F, )
74: VAR_021800 (A355P, chain A/B/C/D/E/F, )
75: VAR_046934 (A361T, chain A/B/C/D/E/F, )
76: VAR_008084 (R369C, chain A/B/C/D/E/F, )
77: VAR_002189 (R369H, chain A/B/C/D/E/F, )
78: VAR_008085 (C370Y, chain A/B/C/D/E/F, )
79: VAR_002190 (V371M, chain A/B/C/D/E/F, )
80: VAR_046935 (D376N, chain A/B/C/D/E/F, )
81: VAR_021801 (R379Q, chain A/B/C/D/E/F, )
82: VAR_046936 (R379W, chain A/B/C/D/E/F, )
83: VAR_002191 (K384E, chain A/B/C/D/E/F, )
84: VAR_008086 (K384N, chain A/B/C/D/E/F, )
85: VAR_008087 (M391I, chain A/B/C/D/E/F, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_008049
P
49
L
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
P
49
L
02
UniProt
VAR_008050
R
58
W
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
R
58
W
03
UniProt
VAR_021790
H
65
R
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
H
65
R
04
UniProt
VAR_046922
A
69
P
CBS_HUMAN
Polymorphism
17849313
A/B/C/D/E/F
A
69
P
05
UniProt
VAR_002171
P
78
R
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
P
78
R
06
UniProt
VAR_008051
G
85
R
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
G
85
R
07
UniProt
VAR_002172
P
88
S
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
P
88
S
08
UniProt
VAR_021791
L
101
P
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
L
101
P
09
UniProt
VAR_002173
K
102
N
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
K
102
N
10
UniProt
VAR_008052
K
102
Q
CBS_HUMAN
Disease (CBSD)
34040148
A/B/C/D/E/F
K
102
Q
11
UniProt
VAR_021792
C
109
R
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
C
109
R
12
UniProt
VAR_002174
A
114
V
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
A
114
V
13
UniProt
VAR_008053
G
116
R
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
G
116
R
14
UniProt
VAR_008054
R
121
C
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
R
121
C
15
UniProt
VAR_008055
R
121
H
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
R
121
H
16
UniProt
VAR_008056
R
121
L
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
R
121
L
17
UniProt
VAR_046923
R
125
P
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
R
125
P
18
UniProt
VAR_002175
R
125
Q
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
R
125
Q
19
UniProt
VAR_008057
R
125
W
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
R
125
W
20
UniProt
VAR_008058
M
126
V
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
M
126
V
21
UniProt
VAR_008059
E
128
D
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
E
128
D
22
UniProt
VAR_002176
E
131
D
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
E
131
D
23
UniProt
VAR_008060
G
139
R
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
G
139
R
24
UniProt
VAR_021793
I
143
M
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
I
143
M
25
UniProt
VAR_002177
E
144
K
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
E
144
K
26
UniProt
VAR_002178
P
145
L
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
P
145
L
27
UniProt
VAR_008061
G
148
R
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
G
148
R
28
UniProt
VAR_008062
G
151
R
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
G
151
R
29
UniProt
VAR_008064
I
152
M
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
I
152
M
30
UniProt
VAR_046924
L
154
Q
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
L
154
Q
31
UniProt
VAR_008065
A
155
T
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
A
155
T
32
UniProt
VAR_046925
A
155
V
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
A
155
V
33
UniProt
VAR_002179
C
165
Y
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
C
165
Y
34
UniProt
VAR_046926
V
168
A
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
V
168
A
35
UniProt
VAR_002180
V
168
M
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
V
168
M
36
UniProt
VAR_046927
M
173
V
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
M
173
V
37
UniProt
VAR_008066
E
176
K
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
E
176
K
38
UniProt
VAR_008067
V
180
A
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
V
180
A
39
UniProt
VAR_008068
T
191
M
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
T
191
M
40
UniProt
VAR_002181
R
224
H
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
R
224
H
41
UniProt
VAR_008070
A
226
T
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
A
226
T
42
UniProt
VAR_021794
N
228
K
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
N
228
K
43
UniProt
VAR_046928
N
228
S
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
N
228
S
44
UniProt
VAR_046929
A
231
P
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
A
231
P
45
UniProt
VAR_008071
D
234
N
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
D
234
N
46
UniProt
VAR_002182
E
239
K
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
E
239
K
47
UniProt
VAR_002183
T
257
M
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
T
257
M
48
UniProt
VAR_008072
T
262
M
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
T
262
M
49
UniProt
VAR_021795
T
262
R
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
T
262
R
50
UniProt
VAR_008073
R
266
G
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
R
266
G
51
UniProt
VAR_008074
R
266
K
CBS_HUMAN
Disease (CBSD)
28934275
A/B/C/D/E/F
R
266
K
52
UniProt
VAR_021796
C
275
Y
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
C
275
Y
53
UniProt
VAR_066100
I
278
S
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
I
278
S
54
UniProt
VAR_002184
I
278
T
CBS_HUMAN
Disease (CBSD)
5742905
A/B/C/D/E/F
I
278
T
55
UniProt
VAR_066101
D
281
N
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
D
281
N
56
UniProt
VAR_046932
A
288
P
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
A
288
P
57
UniProt
VAR_046933
A
288
T
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
A
288
T
58
UniProt
VAR_002185
P
290
L
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
P
290
L
59
UniProt
VAR_008076
E
302
K
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
E
302
K
60
UniProt
VAR_008077
G
305
R
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
G
305
R
61
UniProt
VAR_002186
G
307
S
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
G
307
S
62
UniProt
VAR_008078
V
320
A
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
V
320
A
63
UniProt
VAR_066102
D
321
V
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
D
321
V
64
UniProt
VAR_008079
A
331
E
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
A
331
E
65
UniProt
VAR_002187
A
331
V
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
A
331
V
66
UniProt
VAR_002188
R
336
C
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
R
336
C
67
UniProt
VAR_008080
R
336
H
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
R
336
H
68
UniProt
VAR_021797
L
338
P
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
L
338
P
69
UniProt
VAR_021798
G
347
S
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
G
347
S
70
UniProt
VAR_021799
S
349
N
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
S
349
N
71
UniProt
VAR_008081
S
352
N
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
S
352
N
72
UniProt
VAR_008082
T
353
M
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
T
353
M
73
UniProt
VAR_008083
V
354
M
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
V
354
M
74
UniProt
VAR_021800
A
355
P
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
A
355
P
75
UniProt
VAR_046934
A
361
T
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
A
361
T
76
UniProt
VAR_008084
R
369
C
CBS_HUMAN
Disease (CBSD)
117687681
A/B/C/D/E/F
R
369
C
77
UniProt
VAR_002189
R
369
H
CBS_HUMAN
Disease (CBSD)
11700812
A/B/C/D/E/F
R
369
H
78
UniProt
VAR_008085
C
370
Y
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
C
370
Y
79
UniProt
VAR_002190
V
371
M
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
V
371
M
80
UniProt
VAR_046935
D
376
N
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
D
376
N
81
UniProt
VAR_021801
R
379
Q
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
R
379
Q
82
UniProt
VAR_046936
R
379
W
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
R
379
W
83
UniProt
VAR_002191
K
384
E
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
K
384
E
84
UniProt
VAR_008086
K
384
N
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
K
384
N
85
UniProt
VAR_008087
M
391
I
CBS_HUMAN
Disease (CBSD)
---
A/B/C/D/E/F
M
391
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: CYS_SYNTHASE (A:108-126,B:108-126,C:108-126,D:10...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYS_SYNTHASE
PS00901
Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site.
CBS_HUMAN
108-126
6
A:108-126
B:108-126
C:108-126
D:108-126
E:108-126
F:108-126
[
close PROSITE info
]
Exons
(11, 66)
Info
All Exons
Exon 1.6 (A:43-70 | B:43-70 | C:43-70 | D:43...)
Exon 1.7a (A:70-106 | B:70-106 | C:70-106 | D...)
Exon 1.8 (A:106-151 | B:106-151 | C:106-151 ...)
Exon 1.9 (A:151-177 | B:151-177 | C:151-177 ...)
Exon 1.10 (A:178-222 (gaps) | B:178-222 (gaps...)
Exon 1.11 (A:223-246 | B:223-246 | C:223-246 ...)
Exon 1.12b (A:246-276 | B:246-276 | C:246-276 ...)
Exon 1.13b (A:277-318 | B:277-318 | C:277-318 ...)
Exon 1.14a (A:319-347 | B:319-347 | C:319-347 ...)
Exon 1.15a (A:347-382 | B:347-382 | C:347-382 ...)
Exon 1.16c (A:382-397 | B:382-397 | C:382-397 ...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.5b/1.6
02: Boundary 1.6/1.7a
03: Boundary 1.7a/1.8
04: Boundary 1.8/1.9
05: Boundary 1.9/1.10
06: Boundary 1.10/1.11
07: Boundary 1.11/1.12b
08: Boundary 1.12b/1.13b
09: Boundary 1.13b/1.14a
10: Boundary 1.14a/1.15a
11: Boundary 1.15a/1.16c
12: Boundary 1.16c/1.17a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3c
ENST00000398168
3c
ENSE00001532023
chr21:
44495964-44495880
85
CBS_HUMAN
-
0
0
-
-
1.5b
ENST00000398168
5b
ENSE00001270928
chr21:
44493451-44493376
76
CBS_HUMAN
-
0
0
-
-
1.6
ENST00000398168
6
ENSE00002179360
chr21:
44492311-44492095
217
CBS_HUMAN
1-70
70
6
A:43-70
B:43-70
C:43-70
D:43-70
E:43-70
F:43-70
28
28
28
28
28
28
1.7a
ENST00000398168
7a
ENSE00001050491
chr21:
44488725-44488619
107
CBS_HUMAN
70-106
37
6
A:70-106
B:70-106
C:70-106
D:70-106
E:70-106
F:70-106
37
37
37
37
37
37
1.8
ENST00000398168
8
ENSE00001050486
chr21:
44486487-44486353
135
CBS_HUMAN
106-151
46
6
A:106-151
B:106-151
C:106-151
D:106-151
E:106-151
F:106-151
46
46
46
46
46
46
1.9
ENST00000398168
9
ENSE00002170809
chr21:
44485805-44485726
80
CBS_HUMAN
151-177
27
6
A:151-177
B:151-177
C:151-177
D:151-177
E:151-177
F:151-177
27
27
27
27
27
27
1.10
ENST00000398168
10
ENSE00001050496
chr21:
44485631-44485497
135
CBS_HUMAN
178-222
45
6
A:178-222 (gaps)
B:178-222 (gaps)
C:178-222 (gaps)
D:178-222 (gaps)
E:178-222 (gaps)
F:178-222 (gaps)
45
45
45
45
45
45
1.11
ENST00000398168
11
ENSE00001050492
chr21:
44485382-44485313
70
CBS_HUMAN
223-246
24
6
A:223-246
B:223-246
C:223-246
D:223-246
E:223-246
F:223-246
24
24
24
24
24
24
1.12b
ENST00000398168
12b
ENSE00001050501
chr21:
44484101-44484010
92
CBS_HUMAN
246-276
31
6
A:246-276
B:246-276
C:246-276
D:246-276
E:246-276
F:246-276
31
31
31
31
31
31
1.13b
ENST00000398168
13b
ENSE00001050487
chr21:
44483188-44483063
126
CBS_HUMAN
277-318
42
6
A:277-318
B:277-318
C:277-318
D:277-318
E:277-318
F:277-318
42
42
42
42
42
42
1.14a
ENST00000398168
14a
ENSE00001050497
chr21:
44482505-44482421
85
CBS_HUMAN
319-347
29
6
A:319-347
B:319-347
C:319-347
D:319-347
E:319-347
F:319-347
29
29
29
29
29
29
1.15a
ENST00000398168
15a
ENSE00001050494
chr21:
44480656-44480551
106
CBS_HUMAN
347-382
36
6
A:347-382
B:347-382
C:347-382
D:347-382
E:347-382
F:347-382
36
36
36
36
36
36
1.16c
ENST00000398168
16c
ENSE00001298837
chr21:
44479413-44479336
78
CBS_HUMAN
382-408
27
6
A:382-397
B:382-397
C:382-397
D:382-397
E:382-399
F:382-397
16
16
16
16
18
16
1.17a
ENST00000398168
17a
ENSE00001050495
chr21:
44479078-44478944
135
CBS_HUMAN
408-453
46
0
-
-
1.18
ENST00000398168
18
ENSE00001050498
chr21:
44478363-44478255
109
CBS_HUMAN
453-489
37
0
-
-
1.19
ENST00000398168
19
ENSE00001050489
chr21:
44476997-44476913
85
CBS_HUMAN
490-518
29
0
-
-
1.20a
ENST00000398168
20a
ENSE00001367761
chr21:
44476209-44476168
42
CBS_HUMAN
518-532
15
0
-
-
1.21d
ENST00000398168
21d
ENSE00001531922
chr21:
44474093-44473303
791
CBS_HUMAN
532-565
34
0
-
-
[
close EXON info
]
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1jbqa_ (A:)
1b: SCOP_d1jbqb_ (B:)
1c: SCOP_d1jbqc_ (C:)
1d: SCOP_d1jbqd_ (D:)
1e: SCOP_d1jbqe_ (E:)
1f: SCOP_d1jbqf_ (F:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Tryptophan synthase beta subunit-like PLP-dependent enzymes
(165)
Superfamily
:
Tryptophan synthase beta subunit-like PLP-dependent enzymes
(165)
Family
:
Tryptophan synthase beta subunit-like PLP-dependent enzymes
(120)
Protein domain
:
Cystathionine beta-synthase
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1jbqa_
A:
1b
d1jbqb_
B:
1c
d1jbqc_
C:
1d
d1jbqd_
D:
1e
d1jbqe_
E:
1f
d1jbqf_
F:
[
close SCOP info
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CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_1jbqA01 (A:74-112,A:236-390)
1b: CATH_1jbqB01 (B:74-112,B:236-390)
1c: CATH_1jbqA02 (A:113-222)
1d: CATH_1jbqB02 (B:113-222)
1e: CATH_1jbqC02 (C:113-222)
1f: CATH_1jbqD02 (D:113-222)
1g: CATH_1jbqE02 (E:113-222)
1h: CATH_1jbqF02 (F:113-222)
1i: CATH_1jbqC01 (C:74-112,C:236-390)
1j: CATH_1jbqD01 (D:74-112,D:236-390)
1k: CATH_1jbqE01 (E:74-112,E:236-390)
1l: CATH_1jbqF01 (F:74-112,F:236-390)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1100, no name defined]
(77)
Human (Homo sapiens)
(4)
1a
1jbqA01
A:74-112,A:236-390
1b
1jbqB01
B:74-112,B:236-390
1c
1jbqA02
A:113-222
1d
1jbqB02
B:113-222
1e
1jbqC02
C:113-222
1f
1jbqD02
D:113-222
1g
1jbqE02
E:113-222
1h
1jbqF02
F:113-222
1i
1jbqC01
C:74-112,C:236-390
1j
1jbqD01
D:74-112,D:236-390
1k
1jbqE01
E:74-112,E:236-390
1l
1jbqF01
F:74-112,F:236-390
[
close CATH info
]
Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_PALP_1jbqF01 (F:80-376)
1b: PFAM_PALP_1jbqF02 (F:80-376)
1c: PFAM_PALP_1jbqF03 (F:80-376)
1d: PFAM_PALP_1jbqF04 (F:80-376)
1e: PFAM_PALP_1jbqF05 (F:80-376)
1f: PFAM_PALP_1jbqF06 (F:80-376)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: PALP]
(67)
Family
:
PALP
(67)
Homo sapiens (Human)
(6)
1a
PALP-1jbqF01
F:80-376
1b
PALP-1jbqF02
F:80-376
1c
PALP-1jbqF03
F:80-376
1d
PALP-1jbqF04
F:80-376
1e
PALP-1jbqF05
F:80-376
1f
PALP-1jbqF06
F:80-376
[
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