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1JBI
Asym. Unit
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Asym.Unit (495 KB)
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Models
(20 )
Title
:
NMR STRUCTURE OF THE LCCL DOMAIN
Authors
:
E. Liepinsh, M. Trexler, A. Kaikkonen, J. Weigelt, L. Banyai, L. Patthy, G. Otting
Date
:
05 Jun 01 (Deposition) - 17 Oct 01 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Alpha-Beta Protein, Structural Genomics, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Liepinsh, M. Trexler, A. Kaikkonen, J. Weigelt, L. Banyai, L. Patthy, G. Otting
Nmr Structure Of The Lccl Domain And Implications For Dfna9 Deafness Disorder.
Embo J. V. 20 5347 2001
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(9, 9)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_008532 (P25S, chain A, )
2: VAR_008533 (V40G, chain A, )
3: VAR_072249 (G61V, chain A, )
4: VAR_072250 (G61W, chain A, )
5: VAR_008534 (G62E, chain A, )
6: VAR_008535 (I83N, chain A, )
7: VAR_072251 (I83T, chain A, )
8: VAR_008536 (W91R, chain A, )
9: VAR_017175 (A93T, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_008532
P
51
S
COCH_HUMAN
Disease (DFNA9)
28938175
A
P
25
S
2
UniProt
VAR_008533
V
66
G
COCH_HUMAN
Disease (DFNA9)
---
A
V
40
G
3
UniProt
VAR_072249
G
87
V
COCH_HUMAN
Disease (DFNA9)
---
A
G
61
V
4
UniProt
VAR_072250
G
87
W
COCH_HUMAN
Disease (DFNA9)
---
A
G
61
W
5
UniProt
VAR_008534
G
88
E
COCH_HUMAN
Disease (DFNA9)
---
A
G
62
E
6
UniProt
VAR_008535
I
109
N
COCH_HUMAN
Disease (DFNA9)
---
A
I
83
N
7
UniProt
VAR_072251
I
109
T
COCH_HUMAN
Disease (DFNA9)
---
A
I
83
T
8
UniProt
VAR_008536
W
117
R
COCH_HUMAN
Disease (DFNA9)
---
A
W
91
R
9
UniProt
VAR_017175
A
119
T
COCH_HUMAN
Disease (DFNA9)
---
A
A
93
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: LCCL (A:2-95)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LCCL
PS50820
LCCL domain profile.
COCH_HUMAN
28-121
1
A:2-95
[
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Exons
(4, 4)
Info
All Exons
Exon 1.2 (A:1-2)
Exon 1.3 (A:2-54)
Exon 1.4 (A:54-98)
Exon 1.5 (A:99-100)
View:
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All Exon Boundaries
1: Boundary 1.1f/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000396618
1c
ENSE00001846907
chr14:
31343765-31343797
33
COCH_HUMAN
-
0
0
-
-
1.1f
ENST00000396618
1f
ENSE00002186875
chr14:
31344122-31344178
57
COCH_HUMAN
1-12
12
0
-
-
1.2
ENST00000396618
2
ENSE00000654637
chr14:
31344262-31344309
48
COCH_HUMAN
12-28
17
1
A:1-2
2
1.3
ENST00000396618
3
ENSE00001751450
chr14:
31346778-31346934
157
COCH_HUMAN
28-80
53
1
A:2-54
53
1.4
ENST00000396618
4
ENSE00001657103
chr14:
31348017-31348150
134
COCH_HUMAN
80-125
46
1
A:54-98
45
1.5
ENST00000396618
5
ENSE00001698645
chr14:
31348629-31348691
63
COCH_HUMAN
125-146
22
1
A:99-100
2
1.6
ENST00000396618
6
ENSE00001610421
chr14:
31349658-31349702
45
COCH_HUMAN
146-161
16
0
-
-
1.7
ENST00000396618
7
ENSE00001775943
chr14:
31349793-31349940
148
COCH_HUMAN
161-210
50
0
-
-
1.8
ENST00000396618
8
ENSE00000654644
chr14:
31353759-31353862
104
COCH_HUMAN
210-245
36
0
-
-
1.10
ENST00000396618
10
ENSE00000654645
chr14:
31354600-31354826
227
COCH_HUMAN
245-320
76
0
-
-
1.11a
ENST00000396618
11a
ENSE00000654646
chr14:
31355002-31355518
517
COCH_HUMAN
321-493
173
0
-
-
1.12d
ENST00000396618
12d
ENSE00001953870
chr14:
31358822-31359824
1003
COCH_HUMAN
493-550
58
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1jbia_ (A:)
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Folds
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
LCCL domain
(1)
Superfamily
:
LCCL domain
(1)
Family
:
LCCL domain
(1)
Protein domain
:
Cochlin
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1jbia_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1jbiA00 (A:1-100)
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Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Complex
(381)
Topology
:
Ferric Hydroxamate Uptake Protein; Chain A, domain 1
(37)
Homologous Superfamily
:
[code=2.170.130.20, no name defined]
(1)
Human (Homo sapiens)
(1)
1a
1jbiA00
A:1-100
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_LCCL_1jbiA01 (A:6-95)
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Clans
(
)
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(
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(
)
Clan
:
LCCL-domain
(1)
Family
:
LCCL
(1)
Homo sapiens (Human)
(1)
1a
LCCL-1jbiA01
A:6-95
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Protein
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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