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1J9T
Asym. Unit
Info
Asym.Unit (182 KB)
Biol.Unit 1 (176 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF NITRITE SOAKED REDUCED H255N AFNIR
Authors
:
M. J. Boulanger, M. E. Murphy
Date
:
28 May 01 (Deposition) - 06 Jun 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Cupredoxin Fold Nitrite Copper, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. J. Boulanger, M. E. Murphy
Alternate Substrate Binding Modes To Two Mutant (D98N And H255N) Forms Of Nitrite Reductase From Alcaligenes Faecalis S-6: Structural Model Of A Transient Catalytic Intermediate
Biochemistry V. 40 9132 2001
(for further references see the
PDB file header
)
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: COPPER (II) ION (CUa)
1b: COPPER (II) ION (CUb)
1c: COPPER (II) ION (CUc)
1d: COPPER (II) ION (CUd)
1e: COPPER (II) ION (CUe)
1f: COPPER (II) ION (CUf)
1g: COPPER (II) ION (CUg)
1h: COPPER (II) ION (CUh)
1i: COPPER (II) ION (CUi)
2a: NITRITE ION (NO2a)
2b: NITRITE ION (NO2b)
2c: NITRITE ION (NO2c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CU
9
Ligand/Ion
COPPER (II) ION
2
NO2
3
Ligand/Ion
NITRITE ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
MET A:94 , HIS A:95 , CYS A:136 , PRO A:138 , HIS A:145 , CU A:601
BINDING SITE FOR RESIDUE CU A 600
02
AC2
SOFTWARE
HIS A:95 , CYS A:136 , MET A:150 , CU A:600 , HOH A:5482
BINDING SITE FOR RESIDUE CU A 601
03
AC3
SOFTWARE
ASP A:98 , HIS A:100 , HIS A:135 , ILE B:257 , HIS B:306 , NO2 B:604 , HOH B:6000
BINDING SITE FOR RESIDUE CU A 602
04
AC4
SOFTWARE
ASP A:98 , HIS A:135 , ALA A:137 , CU A:602 , ILE B:257 , HIS B:306 , LEU B:308 , HOH B:5324 , HOH B:6000 , HOH B:6003
BINDING SITE FOR RESIDUE NO2 B 604
05
AC5
SOFTWARE
CYS B:136 , PRO B:138 , HIS B:145 , CU B:701 , HOH B:5483
BINDING SITE FOR RESIDUE CU B 700
06
AC6
SOFTWARE
HIS B:95 , CYS B:136 , MET B:150 , CU B:700
BINDING SITE FOR RESIDUE CU B 701
07
AC7
SOFTWARE
HIS B:100 , HIS B:135 , NO2 B:704 , HOH B:7000 , ILE C:257 , HIS C:306
BINDING SITE FOR RESIDUE CU B 702
08
AC8
SOFTWARE
ASP B:98 , HIS B:135 , ALA B:137 , CU B:702 , HOH B:5394 , HOH B:7000 , HOH B:7003 , ILE C:257 , HIS C:306
BINDING SITE FOR RESIDUE NO2 B 704
09
AC9
SOFTWARE
CYS C:136 , PRO C:138 , HIS C:145 , CU C:801 , HOH C:5481
BINDING SITE FOR RESIDUE CU C 800
10
BC1
SOFTWARE
HIS C:95 , CYS C:136 , HIS C:145 , MET C:150 , CU C:800 , HOH C:5481
BINDING SITE FOR RESIDUE CU C 801
11
BC2
SOFTWARE
ILE A:257 , HIS A:306 , HIS C:100 , HIS C:135 , HOH C:803 , NO2 C:804
BINDING SITE FOR RESIDUE CU C 802
12
BC3
SOFTWARE
ILE A:257 , HIS A:306 , ASP C:98 , HIS C:135 , ALA C:137 , CU C:802 , HOH C:803 , HOH C:8002
BINDING SITE FOR RESIDUE NO2 C 804
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1j9ta1 (A:4-166)
1b: SCOP_d1j9ta2 (A:167-339)
1c: SCOP_d1j9tb1 (B:4-166)
1d: SCOP_d1j9tb2 (B:167-339)
1e: SCOP_d1j9tc1 (C:4-166)
1f: SCOP_d1j9tc2 (C:167-339)
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Protein Domains
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Organisms
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
Multidomain cupredoxins
(146)
Protein domain
:
Nitrite reductase, NIR
(79)
Alcaligenes faecalis, strain s-6 [TaxId: 511]
(31)
1a
d1j9ta1
A:4-166
1b
d1j9ta2
A:167-339
1c
d1j9tb1
B:4-166
1d
d1j9tb2
B:167-339
1e
d1j9tc1
C:4-166
1f
d1j9tc2
C:167-339
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1j9tA01 (A:11-158)
1b: CATH_1j9tA02 (A:159-325)
1c: CATH_1j9tB02 (B:159-325)
1d: CATH_1j9tC02 (C:159-325)
1e: CATH_1j9tB01 (B:11-158)
1f: CATH_1j9tC01 (C:11-158)
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Organisms
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)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Cupredoxins - blue copper proteins
(420)
Alcaligenes faecalis. Organism_taxid: 511. Strain: s-6.
(6)
1a
1j9tA01
A:11-158
1b
1j9tA02
A:159-325
1c
1j9tB02
B:159-325
1d
1j9tC02
C:159-325
1e
1j9tB01
B:11-158
1f
1j9tC01
C:11-158
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (182 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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