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1J8G
Asym. Unit
Info
Asym.Unit (33 KB)
Biol.Unit 1 (15 KB)
Biol.Unit 2 (13 KB)
Biol.Unit 3 (14 KB)
Biol.Unit 4 (13 KB)
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Title
:
X-RAY ANALYSIS OF A RNA TETRAPLEX R(UGGGGU)4 AT ULTRA-HIGH RESOLUTION
Authors
:
J. Deng, Y. Xiong, M. Sundaralingam
Date
:
21 May 01 (Deposition) - 23 Nov 01 (Release) - 16 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
0.61
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (4x)
Biol. Unit 2: B (4x)
Biol. Unit 3: C (4x)
Biol. Unit 4: D (4x)
Keywords
:
Rna Tetraplex, Sr Ions, U Tetrad, Octaplex, Rna
(Keyword Search:
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Reference
:
J. Deng, Y. Xiong, M. Sundaralingam
X-Ray Analysis Of An Rna Tetraplex (Uggggu)(4) With Divalen Sr(2+) Ions At Subatomic Resolution (0. 61 A).
Proc. Natl. Acad. Sci. Usa V. 98 13665 2001
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Hetero Components
(4, 14)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
3a: SPERMINE (SPMa)
4a: STRONTIUM ION (SRa)
4b: STRONTIUM ION (SRb)
4c: STRONTIUM ION (SRc)
4d: STRONTIUM ION (SRd)
4e: STRONTIUM ION (SRe)
4f: STRONTIUM ION (SRf)
4g: STRONTIUM ION (SRg)
4h: STRONTIUM ION (SRh)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
3
Ligand/Ion
CALCIUM ION
2
NA
2
Ligand/Ion
SODIUM ION
3
SPM
1
Ligand/Ion
SPERMINE
4
SR
8
Ligand/Ion
STRONTIUM ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
G A:2 , G A:3 , HOH A:67 , HOH A:137 , HOH A:151 , HOH A:164 , G B:14 , G B:15 , HOH B:109 , HOH B:177 , U C:21 , G C:22 , HOH C:184
BINDING SITE FOR RESIDUE SPM A 62
02
AC2
SOFTWARE
G D:34 , G D:35
BINDING SITE FOR RESIDUE SR D 501
03
AC3
SOFTWARE
G B:12 , G B:13
BINDING SITE FOR RESIDUE SR B 502
04
AC4
SOFTWARE
G C:22 , G C:23
BINDING SITE FOR RESIDUE SR C 503
05
AC5
SOFTWARE
G C:24 , G C:25 , HOH C:102
BINDING SITE FOR RESIDUE SR C 504
06
AC6
SOFTWARE
G A:4 , G A:5 , NA A:512
BINDING SITE FOR RESIDUE SR A 505
07
AC7
SOFTWARE
G A:2 , G A:3
BINDING SITE FOR RESIDUE SR A 506
08
AC8
SOFTWARE
G B:14 , G B:15
BINDING SITE FOR RESIDUE SR B 507
09
AC9
SOFTWARE
G D:32 , G D:33
BINDING SITE FOR RESIDUE SR D 508
10
BC1
SOFTWARE
U C:26 , HOH C:121 , HOH C:125 , HOH C:127 , HOH C:198 , HOH C:199 , HOH C:200
BINDING SITE FOR RESIDUE CA C 509
11
BC2
SOFTWARE
U A:1 , HOH A:118 , HOH A:146 , HOH A:149 , HOH A:156 , G B:13 , HOH C:122 , HOH C:205
BINDING SITE FOR RESIDUE CA B 510
12
BC3
SOFTWARE
U A:6 , HOH A:157 , HOH A:185 , HOH A:187 , HOH A:191 , HOH A:201 , HOH A:206
BINDING SITE FOR RESIDUE CA A 511
13
BC4
SOFTWARE
G A:5 , U A:6 , SR A:505
BINDING SITE FOR RESIDUE NA A 512
14
BC5
SOFTWARE
G B:15 , U B:16 , HOH B:101
BINDING SITE FOR RESIDUE NA B 513
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asym.Unit (33 KB)
Header - Asym.Unit
Biol.Unit 1 (15 KB)
Header - Biol.Unit 1
Biol.Unit 2 (13 KB)
Header - Biol.Unit 2
Biol.Unit 3 (14 KB)
Header - Biol.Unit 3
Biol.Unit 4 (13 KB)
Header - Biol.Unit 4
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