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Getting 'Biological Unit' information from database.
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1J88
Biol. Unit 1
Info
Asym.Unit (171 KB)
Biol.Unit 1 (37 KB)
Biol.Unit 2 (36 KB)
Biol.Unit 3 (36 KB)
Biol.Unit 4 (36 KB)
Biol.Unit 5 (35 KB)
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(1)
Title
:
HUMAN HIGH AFFINITY FC RECEPTOR FC(EPSILON)RI(ALPHA), TETRAGONAL CRYSTAL FORM 1
Authors
:
S. C. Garman, S. Sechi, J. P. Kinet, T. S. Jardetzky
Date
:
20 May 01 (Deposition) - 29 Aug 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Keywords
:
Immune System, Fc Receptor, Ige Receptor, Glycoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. C. Garman, S. Sechi, J. P. Kinet, T. S. Jardetzky
The Analysis Of The Human High Affinity Ige Receptor Fc Epsilon Ri Alpha From Multiple Crystal Forms.
J. Mol. Biol. V. 311 1049 2001
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Hetero Components
(3, 14)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
3ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
3ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
3ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
3ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
3af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
3ag: N-ACETYL-D-GLUCOSAMINE (NAGag)
3ah: N-ACETYL-D-GLUCOSAMINE (NAGah)
3ai: N-ACETYL-D-GLUCOSAMINE (NAGai)
3aj: N-ACETYL-D-GLUCOSAMINE (NAGaj)
3ak: N-ACETYL-D-GLUCOSAMINE (NAGak)
3al: N-ACETYL-D-GLUCOSAMINE (NAGal)
3am: N-ACETYL-D-GLUCOSAMINE (NAGam)
3an: N-ACETYL-D-GLUCOSAMINE (NAGan)
3ao: N-ACETYL-D-GLUCOSAMINE (NAGao)
3ap: N-ACETYL-D-GLUCOSAMINE (NAGap)
3aq: N-ACETYL-D-GLUCOSAMINE (NAGaq)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
3o: N-ACETYL-D-GLUCOSAMINE (NAGo)
3p: N-ACETYL-D-GLUCOSAMINE (NAGp)
3q: N-ACETYL-D-GLUCOSAMINE (NAGq)
3r: N-ACETYL-D-GLUCOSAMINE (NAGr)
3s: N-ACETYL-D-GLUCOSAMINE (NAGs)
3t: N-ACETYL-D-GLUCOSAMINE (NAGt)
3u: N-ACETYL-D-GLUCOSAMINE (NAGu)
3v: N-ACETYL-D-GLUCOSAMINE (NAGv)
3w: N-ACETYL-D-GLUCOSAMINE (NAGw)
3x: N-ACETYL-D-GLUCOSAMINE (NAGx)
3y: N-ACETYL-D-GLUCOSAMINE (NAGy)
3z: N-ACETYL-D-GLUCOSAMINE (NAGz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
11
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: CC7 (SOFTWARE)
16: FC1 (SOFTWARE)
17: FC2 (SOFTWARE)
18: FC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:21 , NAG A:222
BINDING SITE FOR RESIDUE NAG A 221
02
AC2
SOFTWARE
NAG A:221 , BMA A:223 , GLN C:101 , PRO C:102
BINDING SITE FOR RESIDUE NAG A 222
03
AC3
SOFTWARE
NAG A:222
BINDING SITE FOR RESIDUE BMA A 223
04
AC4
SOFTWARE
HIS A:41 , ASN A:42 , GLU A:61 , SER A:63 , NAG A:243 , GLN C:157
BINDING SITE FOR RESIDUE NAG A 242
05
AC5
SOFTWARE
PHE A:60 , GLU A:61 , NAG A:242 , MAN A:244
BINDING SITE FOR RESIDUE NAG A 243
06
AC6
SOFTWARE
PHE A:60 , NAG A:243 , MAN A:245
BINDING SITE FOR RESIDUE MAN A 244
07
AC7
SOFTWARE
MAN A:244
BINDING SITE FOR RESIDUE MAN A 245
08
AC8
SOFTWARE
ASN A:50 , SER A:51 , SER A:52 , ASN A:54 , NAG A:251
BINDING SITE FOR RESIDUE NAG A 250
09
AC9
SOFTWARE
ASN A:30 , PHE A:32 , GLU A:33 , NAG A:250
BINDING SITE FOR RESIDUE NAG A 251
10
BC1
SOFTWARE
ASN A:74
BINDING SITE FOR RESIDUE NAG A 274
11
BC2
SOFTWARE
PHE A:104 , ASN A:135
BINDING SITE FOR RESIDUE NAG A 335
12
BC3
SOFTWARE
GLU A:99 , GLY A:100 , ASN A:140 , GLU C:47
BINDING SITE FOR RESIDUE NAG A 340
13
BC4
SOFTWARE
ASN A:166 , NAG A:367 , GLU C:161
BINDING SITE FOR RESIDUE NAG A 366
14
BC5
SOFTWARE
NAG A:366 , GLU C:161
BINDING SITE FOR RESIDUE NAG A 367
15
CC7
SOFTWARE
LYS A:4 , MET A:98 , NAG C:221
BINDING SITE FOR RESIDUE NAG C 222
16
FC1
SOFTWARE
GLN A:157 , GLN C:71 , GLN C:72 , HIS E:41 , ASN E:42 , GLU E:61 , SER E:63 , TYR E:80 , NAG E:243
BINDING SITE FOR RESIDUE NAG E 242
17
FC2
SOFTWARE
GLN A:157 , GLN C:71 , PHE E:60 , GLU E:61 , TYR E:80 , GLU E:82 , NAG E:242 , BMA E:244
BINDING SITE FOR RESIDUE NAG E 243
18
FC7
SOFTWARE
ASP A:159 , ASN E:166
BINDING SITE FOR RESIDUE NAG E 366
[
close Site info
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_020091 (K59R, chain A, )
2: VAR_020092 (S76N, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_020091
K
84
R
FCERA_HUMAN
Polymorphism
2298804
A
K
59
R
2
UniProt
VAR_020092
S
101
N
FCERA_HUMAN
Polymorphism
2298805
A
S
76
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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Label:
End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 10)
Info
All SCOP Domains
1a: SCOP_d1j88a1 (A:4-85)
1b: SCOP_d1j88c1 (C:4-85)
1c: SCOP_d1j88c2 (C:86-171)
1d: SCOP_d1j88d1 (D:4-85)
1e: SCOP_d1j88d2 (D:86-171)
1f: SCOP_d1j88e1 (E:4-85)
1g: SCOP_d1j88e2 (E:86-171)
1h: SCOP_d1j88a2 (A:86-171)
1i: SCOP_d1j88b1 (B:4-85)
1j: SCOP_d1j88b2 (B:86-171)
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Classes
(
)
(
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(
)
(
)
Superfamilies
(
)
(
)
Families
(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
I set domains
(152)
Protein domain
:
IgE high affinity receptor alpha subunit
(7)
Human (Homo sapiens) [TaxId: 9606]
(7)
1a
d1j88a1
A:4-85
1b
d1j88c1
C:4-85
1c
d1j88c2
C:86-171
1d
d1j88d1
D:4-85
1e
d1j88d2
D:86-171
1f
d1j88e1
E:4-85
1g
d1j88e2
E:86-171
1h
d1j88a2
A:86-171
1i
d1j88b1
B:4-85
1j
d1j88b2
B:86-171
[
close SCOP info
]
CATH Domains
(1, 10)
Info
all CATH domains
1a: CATH_1j88A01 (A:4-84)
1b: CATH_1j88B01 (B:4-84)
1c: CATH_1j88C01 (C:4-84)
1d: CATH_1j88D01 (D:4-84)
1e: CATH_1j88E01 (E:4-84)
1f: CATH_1j88A02 (A:85-171)
1g: CATH_1j88B02 (B:85-171)
1h: CATH_1j88C02 (C:85-171)
1i: CATH_1j88D02 (D:85-171)
1j: CATH_1j88E02 (E:85-171)
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
1j88A01
A:4-84
1b
1j88B01
B:4-84
1c
1j88C01
C:4-84
1d
1j88D01
D:4-84
1e
1j88E01
E:4-84
1f
1j88A02
A:85-171
1g
1j88B02
B:85-171
1h
1j88C02
C:85-171
1i
1j88D02
D:85-171
1j
1j88E02
E:85-171
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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Asym.Unit (171 KB)
Header - Asym.Unit
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Biol.Unit 3 (36 KB)
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