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Getting 'Biological Unit' information from database.
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Getting 'Exon' information from database.
1J87
Asym. Unit
Info
Asym.Unit (36 KB)
Biol.Unit 1 (30 KB)
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(1)
Title
:
HUMAN HIGH AFFINITY FC RECEPTOR FC(EPSILON)RI(ALPHA), HEXAGONAL CRYSTAL FORM 1
Authors
:
S. C. Garman, S. Sechi, J. P. Kinet, T. S. Jardetzky
Date
:
20 May 01 (Deposition) - 29 Aug 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Immune System, Fc Receptor, Ige Receptor, Glycoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. C. Garman, S. Sechi, J. P. Kinet, T. S. Jardetzky
The Analysis Of The Human High Affinity Ige Receptor Fc Epsilon Ri Alpha From Multiple Crystal Forms.
J. Mol. Biol. V. 311 1049 2001
[
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Hetero Components
(4, 12)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: ALPHA-L-FUCOSE (FUCa)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
3
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:19 , ASN A:21 , VAL A:56 , NAG A:222
BINDING SITE FOR RESIDUE NAG A 221
02
AC2
SOFTWARE
NAG A:221
BINDING SITE FOR RESIDUE NAG A 222
03
AC3
SOFTWARE
ASN A:42 , PHE A:60 , GLU A:61 , SER A:63 , NAG A:243
BINDING SITE FOR RESIDUE NAG A 242
04
AC4
SOFTWARE
PHE A:60 , GLU A:61 , SER A:63 , GLU A:82 , NAG A:242 , BMA A:244
BINDING SITE FOR RESIDUE NAG A 243
05
AC5
SOFTWARE
PHE A:60 , NAG A:243 , MAN A:245 , MAN A:246
BINDING SITE FOR RESIDUE BMA A 244
06
AC6
SOFTWARE
BMA A:244
BINDING SITE FOR RESIDUE MAN A 245
07
AC7
SOFTWARE
SER A:85 , BMA A:244
BINDING SITE FOR RESIDUE MAN A 246
08
AC8
SOFTWARE
GLY A:100 , ASP A:114 , ASN A:140 , TRP A:156 , NAG A:341 , FUC A:342
BINDING SITE FOR RESIDUE NAG A 340
09
AC9
SOFTWARE
ASP A:114 , TYR A:116 , NAG A:340 , FUC A:342
BINDING SITE FOR RESIDUE NAG A 341
10
BC1
SOFTWARE
NAG A:340 , NAG A:341
BINDING SITE FOR RESIDUE FUC A 342
11
BC2
SOFTWARE
THR A:148 , ASN A:166 , NAG A:367
BINDING SITE FOR RESIDUE NAG A 366
12
BC3
SOFTWARE
NAG A:366
BINDING SITE FOR RESIDUE NAG A 367
[
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_020091 (K59R, chain A, )
2: VAR_020092 (S76N, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_020091
K
84
R
FCERA_HUMAN
Polymorphism
2298804
A
K
59
R
2
UniProt
VAR_020092
S
101
N
FCERA_HUMAN
Polymorphism
2298805
A
S
76
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
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Exons
(3, 3)
Info
All Exons
Exon 1.3 (A:1-1)
Exon 1.4a (A:1-86 (gaps))
Exon 1.5 (A:86-171)
View:
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All Exon Boundaries
1: Boundary 1.2a/1.3
2: Boundary 1.3/1.4a
3: Boundary 1.4a/1.5
4: Boundary 1.5/1.6b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000368115
1
ENSE00001277214
chr1:
159259504-159259543
40
FCERA_HUMAN
-
0
0
-
-
1.2a
ENST00000368115
2a
ENSE00001277230
chr1:
159272096-159272209
114
FCERA_HUMAN
1-19
19
0
-
-
1.3
ENST00000368115
3
ENSE00001067917
chr1:
159272644-159272664
21
FCERA_HUMAN
19-26
8
1
A:1-1
1
1.4a
ENST00000368115
4a
ENSE00001067919
chr1:
159273718-159273972
255
FCERA_HUMAN
26-111
86
1
A:1-86 (gaps)
86
1.5
ENST00000368115
5
ENSE00001277186
chr1:
159275778-159276035
258
FCERA_HUMAN
111-197
87
1
A:86-171
86
1.6b
ENST00000368115
6b
ENSE00001446352
chr1:
159277538-159278014
477
FCERA_HUMAN
197-257
61
0
-
-
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1j87a1 (A:1-85)
1b: SCOP_d1j87a2 (A:86-171)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
I set domains
(152)
Protein domain
:
IgE high affinity receptor alpha subunit
(7)
Human (Homo sapiens) [TaxId: 9606]
(7)
1a
d1j87a1
A:1-85
1b
d1j87a2
A:86-171
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1j87A01 (A:4-84)
1b: CATH_1j87A02 (A:85-171)
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)
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)
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
1j87A01
A:4-84
1b
1j87A02
A:85-171
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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Atom Selection
(currently selected atoms:
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Protein
Nucleic
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Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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