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1J86
Biol. Unit 2
Info
Asym.Unit (72 KB)
Biol.Unit 1 (35 KB)
Biol.Unit 2 (34 KB)
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(1)
Title
:
HUMAN HIGH AFFINITY FC RECEPTOR FC(EPSILON)RI(ALPHA), MONOCLINIC CRYSTAL FORM 2
Authors
:
S. C. Garman, S. Sechi, J. P. Kinet, T. S. Jardetzky
Date
:
20 May 01 (Deposition) - 29 Aug 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Immune System, Fc Receptor, Ige Receptor, Glycoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. C. Garman, S. Sechi, J. P. Kinet, T. S. Jardetzky
The Analysis Of The Human High Affinity Ige Receptor Fc Epsilon Ri Alpha From Multiple Crystal Forms.
J. Mol. Biol. V. 311 1049 2001
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Hetero Components
(4, 11)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: ALPHA-D-FUCOSE (FCAa)
2b: ALPHA-D-FUCOSE (FCAb)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4p: N-ACETYL-D-GLUCOSAMINE (NAGp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
FCA
1
Ligand/Ion
ALPHA-D-FUCOSE
3
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(12, 12)
Info
All Sites
01: AC7 (SOFTWARE)
02: BC3 (SOFTWARE)
03: BC4 (SOFTWARE)
04: BC5 (SOFTWARE)
05: BC6 (SOFTWARE)
06: BC7 (SOFTWARE)
07: BC8 (SOFTWARE)
08: BC9 (SOFTWARE)
09: CC1 (SOFTWARE)
10: CC2 (SOFTWARE)
11: CC3 (SOFTWARE)
12: CC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC7
SOFTWARE
GLN A:3 , GLN A:72 , VAL A:73 , ASN A:74 , ASP A:159 , FCA A:275 , NAG A:276 , TYR B:131
BINDING SITE FOR RESIDUE NAG A 274
02
BC3
SOFTWARE
GLY B:19 , GLU B:20 , ASN B:21 , ASN B:57
BINDING SITE FOR RESIDUE NAG B 221
03
BC4
SOFTWARE
HIS B:41 , ASN B:42 , GLU B:61 , SER B:63 , NAG B:243
BINDING SITE FOR RESIDUE NAG B 242
04
BC5
SOFTWARE
PHE B:60 , GLU B:61 , GLU B:82 , NAG B:242 , BMA B:244
BINDING SITE FOR RESIDUE NAG B 243
05
BC6
SOFTWARE
PHE B:60 , NAG B:243 , MAN B:245
BINDING SITE FOR RESIDUE BMA B 244
06
BC7
SOFTWARE
BMA B:244
BINDING SITE FOR RESIDUE MAN B 245
07
BC8
SOFTWARE
PHE B:104 , ASN B:133 , ASN B:135 , NAG B:336 , FCA B:337
BINDING SITE FOR RESIDUE NAG B 335
08
BC9
SOFTWARE
NAG B:335
BINDING SITE FOR RESIDUE NAG B 336
09
CC1
SOFTWARE
NAG B:335
BINDING SITE FOR RESIDUE FCA B 337
10
CC2
SOFTWARE
GLY B:100 , ASN B:140 , NAG B:341
BINDING SITE FOR RESIDUE NAG B 340
11
CC3
SOFTWARE
NAG B:340
BINDING SITE FOR RESIDUE NAG B 341
12
CC4
SOFTWARE
ASN B:166
BINDING SITE FOR RESIDUE NAG B 366
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_020091 (K59R, chain B, )
2: VAR_020092 (S76N, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_020091
K
84
R
FCERA_HUMAN
Polymorphism
2298804
B
K
59
R
2
UniProt
VAR_020092
S
101
N
FCERA_HUMAN
Polymorphism
2298805
B
S
76
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
Info
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1j86a1 (A:1-85)
1b: SCOP_d1j86a2 (A:86-174)
1c: SCOP_d1j86b1 (B:1-85)
1d: SCOP_d1j86b2 (B:86-173)
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Protein Domains
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(
)
Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
I set domains
(152)
Protein domain
:
IgE high affinity receptor alpha subunit
(7)
Human (Homo sapiens) [TaxId: 9606]
(7)
1a
d1j86a1
A:1-85
1b
d1j86a2
A:86-174
1c
d1j86b1
B:1-85
1d
d1j86b2
B:86-173
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1j86A01 (A:4-84)
1b: CATH_1j86B01 (B:4-84)
1c: CATH_1j86A02 (A:85-174)
1d: CATH_1j86B02 (B:85-173)
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
1j86A01
A:4-84
1b
1j86B01
B:4-84
1c
1j86A02
A:85-174
1d
1j86B02
B:85-173
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain B
Asymmetric Unit 1
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Asym.Unit (72 KB)
Header - Asym.Unit
Biol.Unit 1 (35 KB)
Header - Biol.Unit 1
Biol.Unit 2 (34 KB)
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