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1J7U
Asym. Unit
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Biol.Unit 1 (95 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF 3',5"-AMINOGLYCOSIDE PHOSPHOTRANSFERASE TYPE IIIA AMPPNP COMPLEX
Authors
:
D. L. Burk, W. C. Hon, A. K. -W. Leung, A. M. Berghuis
Date
:
18 May 01 (Deposition) - 08 Aug 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Antibiotic Resistance, Kinase, Atp-Binding, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. L. Burk, W. C. Hon, A. K. Leung, A. M. Berghuis
Structural Analyses Of Nucleotide Binding To An Aminoglycoside Phosphotransferase.
Biochemistry V. 40 8756 2001
(for further references see the
PDB file header
)
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPa)
1b: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
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No.
Name
Count
Type
Full Name
1
ANP
2
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2
MG
4
Ligand/Ion
MAGNESIUM ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:195 , ASP A:208 , ANP A:303 , HOH A:349 , HOH A:390
BINDING SITE FOR RESIDUE MG A 301
2
AC2
SOFTWARE
ASP A:208 , ANP A:303 , HOH A:347 , HOH A:348
BINDING SITE FOR RESIDUE MG A 302
3
AC3
SOFTWARE
ASN B:195 , ASP B:208 , ANP B:304 , HOH B:390 , HOH B:391
BINDING SITE FOR RESIDUE MG B 301
4
AC4
SOFTWARE
ASP B:208 , ANP B:304 , HOH B:353 , HOH B:354
BINDING SITE FOR RESIDUE MG B 302
5
AC5
SOFTWARE
ASP A:22 , SER A:27 , VAL A:31 , TYR A:42 , LYS A:44 , MET A:90 , SER A:91 , GLU A:92 , ALA A:93 , SER A:194 , ASN A:195 , PHE A:197 , ILE A:207 , ASP A:208 , MG A:301 , MG A:302 , HOH A:342 , HOH A:347 , HOH A:348 , HOH A:349 , HOH A:354 , HOH A:390 , HOH A:394 , HOH A:395
BINDING SITE FOR RESIDUE ANP A 303
6
AC6
SOFTWARE
ASP B:22 , MET B:26 , SER B:27 , VAL B:31 , TYR B:42 , LYS B:44 , MET B:90 , SER B:91 , GLU B:92 , ALA B:93 , LEU B:97 , ASP B:190 , SER B:194 , ASN B:195 , PHE B:197 , ILE B:207 , ASP B:208 , MG B:301 , MG B:302 , HOH B:313 , HOH B:341 , HOH B:348 , HOH B:353 , HOH B:354 , HOH B:390 , HOH B:391 , HOH B:394 , HOH B:399
BINDING SITE FOR RESIDUE ANP B 304
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1j7ua_ (A:)
1b: SCOP_d1j7ub_ (B:)
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Protein Domains
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(
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(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
APH phosphotransferases
(17)
Protein domain
:
Type IIIa 3',5-aminoglycoside phosphotransferase
(8)
Enterococcus faecalis [TaxId: 1351]
(8)
1a
d1j7ua_
A:
1b
d1j7ub_
B:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1j7uA01 (A:2-91)
1b: CATH_1j7uB01 (B:2-91)
2a: CATH_1j7uA02 (A:92-264)
2b: CATH_1j7uB02 (B:92-264)
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Organisms
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(
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Enterococcus faecalis. Organism_taxid: 1351.
(5)
1a
1j7uA01
A:2-91
1b
1j7uB01
B:2-91
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2
(23)
Homologous Superfamily
:
[code=3.90.1200.10, no name defined]
(23)
Enterococcus faecalis. Organism_taxid: 1351.
(5)
2a
1j7uA02
A:92-264
2b
1j7uB02
B:92-264
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Pfam Domains
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