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1J6Z
Asym. Unit
Info
Asym.Unit (75 KB)
Biol.Unit 1 (69 KB)
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(1)
Title
:
UNCOMPLEXED ACTIN
Authors
:
L. R. Otterbein, P. Graceffa, R. Dominguez
Date
:
15 May 01 (Deposition) - 15 Aug 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.54
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Actin, Tetramethylrhodamine-5-Maleimide, Adp-State, Contractile Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. R. Otterbein, P. Graceffa, R. Dominguez
The Crystal Structure Of Uncomplexed Actin In The Adp State.
Science V. 293 708 2001
(for further references see the
PDB file header
)
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Hetero Components
(4, 9)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
3a: 4-METHYL-HISTIDINE (HICa)
4a: TETRAMETHYLRHODAMINE-5-MALEIMIDE (RHOa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
CA
6
Ligand/Ion
CALCIUM ION
3
HIC
1
Mod. Amino Acid
4-METHYL-HISTIDINE
4
RHO
1
Ligand/Ion
TETRAMETHYLRHODAMINE-5-MALEIMIDE
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ADP A:1380 , HOH A:1385 , HOH A:1387 , HOH A:1388 , HOH A:1390 , HOH A:1392 , HOH A:1398
BINDING SITE FOR RESIDUE CA A 382
2
AC2
SOFTWARE
GLU A:205 , HOH A:1504 , HOH A:1507 , HOH A:1530 , HOH A:1551 , HOH A:1664
BINDING SITE FOR RESIDUE CA A 383
3
AC3
SOFTWARE
GLN A:354 , TRP A:356 , GLU A:361 , HOH A:1476 , HOH A:1520 , HOH A:1528
BINDING SITE FOR RESIDUE CA A 384
4
AC4
SOFTWARE
ASP A:222 , GLU A:224 , HOH A:1486 , HOH A:1744 , HOH A:1775
BINDING SITE FOR RESIDUE CA A 385
5
AC5
SOFTWARE
VAL A:30 , HOH A:1480 , HOH A:1745 , HOH A:1773 , HOH A:1774
BINDING SITE FOR RESIDUE CA A 386
6
AC6
SOFTWARE
VAL A:201 , GLY A:268 , GLU A:270 , HOH A:1465 , HOH A:1482 , HOH A:1760
BINDING SITE FOR RESIDUE CA A 387
7
AC7
SOFTWARE
GLY A:13 , SER A:14 , GLY A:15 , LEU A:16 , LYS A:18 , GLY A:156 , ASP A:157 , GLY A:182 , LYS A:213 , GLU A:214 , GLY A:301 , GLY A:302 , THR A:303 , MET A:305 , TYR A:306 , LYS A:336 , CA A:382 , HOH A:1382 , HOH A:1388 , HOH A:1389 , HOH A:1398 , HOH A:1415 , HOH A:1447 , HOH A:1563
BINDING SITE FOR RESIDUE ADP A 1380
8
AC8
SOFTWARE
TYR A:133 , TYR A:143 , THR A:148 , LEU A:346 , PHE A:352 , MET A:355 , TRP A:356 , HOH A:1498 , HOH A:1622
BINDING SITE FOR RESIDUE RHO A 1381
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: ACTINS_1 (A:53-63)
2: ACTINS_ACT_LIKE (A:104-116)
3: ACTINS_2 (A:356-364)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ACTINS_1
PS00406
Actins signature 1.
ACTS_RABIT
55-65
1
A:53-63
2
ACTINS_ACT_LIKE
PS01132
Actins and actin-related proteins signature.
ACTS_RABIT
106-118
1
A:104-116
3
ACTINS_2
PS00432
Actins signature 2.
ACTS_RABIT
358-366
1
A:356-364
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1j6za1 (A:4-146)
1b: SCOP_d1j6za2 (A:147-372)
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(
)
(
)
Folds
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)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
Actin/HSP70
(199)
Protein domain
:
Actin
(69)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(55)
1a
d1j6za1
A:4-146
1b
d1j6za2
A:147-372
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CATH Domains
(3, 4)
Info
all CATH domains
1a: CATH_1j6zA01 (A:4-34,A:71-134,A:337-371)
1b: CATH_1j6zA03 (A:136-181,A:271-332)
2a: CATH_1j6zA04 (A:182-267)
3a: CATH_1j6zA02 (A:35-68)
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Topologies
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.40, no name defined]
(217)
Rabbit (Oryctolagus cuniculus)
(44)
1a
1j6zA01
A:4-34,A:71-134,A:337-371
1b
1j6zA03
A:136-181,A:271-332
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Actin; Chain A, domain 4
(156)
Homologous Superfamily
:
Actin; Chain A, domain 4
(155)
Rabbit (Oryctolagus cuniculus)
(44)
2a
1j6zA04
A:182-267
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Actin; Chain A, domain 2
(36)
Homologous Superfamily
:
Actin; Chain A, domain 2
(36)
Rabbit (Oryctolagus cuniculus)
(17)
3a
1j6zA02
A:35-68
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Pfam Domains
(0, 0)
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all PFAM domains
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Protein & NOT Site
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Chain A
Asymmetric Unit 1
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Asym.Unit (75 KB)
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