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1J6S
Asym. Unit
Info
Asym.Unit (22 KB)
Biol.Unit 1 (11 KB)
Biol.Unit 2 (10 KB)
Biol.Unit 3 (10 KB)
Biol.Unit 4 (9 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AN RNA TETRAPLEX (UGAGGU)4 WITH A-TETRADS, G-TETRADS, U-TETRADS AND G-U OCTADS
Authors
:
B. Pan, Y. Xiong, K. Shi, J. Deng, M. Sundaralingam
Date
:
10 Jul 02 (Deposition) - 05 Aug 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (4x)
Biol. Unit 2: B (4x)
Biol. Unit 3: C (4x)
Biol. Unit 4: D (4x)
Keywords
:
Rna, Tetraplex, G-U Octads, A-Tetrads, U-Tetrads, G-Tetrads
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Pan, Y. Xiong, K. Shi, J. Deng, M. Sundaralingam
Crystal Structure Of An Rna Purine-Rich Tetraplex Containing Adenine Tetrads: Implications For Specific Binding In Rna Tetraplexes
Structure V. 11 815 2003
(for further references see the
PDB file header
)
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Hetero Components
(3, 20)
Info
All Hetero Components
1a: BARIUM ION (BAa)
1b: BARIUM ION (BAb)
1c: BARIUM ION (BAc)
1d: BARIUM ION (BAd)
1e: BARIUM ION (BAe)
1f: BARIUM ION (BAf)
1g: BARIUM ION (BAg)
1h: BARIUM ION (BAh)
2a: 5-BROMO-2'-DEOXYURIDINE-5'-MONOPHO... (BRUa)
2b: 5-BROMO-2'-DEOXYURIDINE-5'-MONOPHO... (BRUb)
2c: 5-BROMO-2'-DEOXYURIDINE-5'-MONOPHO... (BRUc)
2d: 5-BROMO-2'-DEOXYURIDINE-5'-MONOPHO... (BRUd)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
3d: SODIUM ION (NAd)
3e: SODIUM ION (NAe)
3f: SODIUM ION (NAf)
3g: SODIUM ION (NAg)
3h: SODIUM ION (NAh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BA
8
Ligand/Ion
BARIUM ION
2
BRU
4
Mod. Nucleotide
5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
3
NA
8
Ligand/Ion
SODIUM ION
[
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
G C:16 , G C:17 , NA C:201
BINDING SITE FOR RESIDUE BA C 101
02
AC2
SOFTWARE
G D:22 , G D:23
BINDING SITE FOR RESIDUE BA D 102
03
AC3
SOFTWARE
G B:10 , G B:11 , NA B:207
BINDING SITE FOR RESIDUE BA B 103
04
AC4
SOFTWARE
BRU B:7 , G B:8 , NA C:209
BINDING SITE FOR RESIDUE BA B 104
05
AC5
SOFTWARE
G A:4 , G A:5
BINDING SITE FOR RESIDUE BA A 105
06
AC6
SOFTWARE
U C:18 , HOH C:214 , HOH C:313 , HOH C:371 , HOH C:372 , HOH C:406
BINDING SITE FOR RESIDUE BA C 106
07
AC7
SOFTWARE
NA A:205 , BRU D:19 , G D:20
BINDING SITE FOR RESIDUE BA D 107
08
AC8
SOFTWARE
G A:5 , U A:6 , HOH A:387
BINDING SITE FOR RESIDUE BA A 108
09
AC9
SOFTWARE
G C:17 , U C:18 , BA C:101
BINDING SITE FOR RESIDUE NA C 201
10
BC1
SOFTWARE
G B:8 , A B:9
BINDING SITE FOR RESIDUE NA B 202
11
BC2
SOFTWARE
G C:14 , A C:15
BINDING SITE FOR RESIDUE NA C 203
12
BC3
SOFTWARE
G A:2 , NA A:206 , BRU D:19 , BA D:107
BINDING SITE FOR RESIDUE NA A 205
13
BC4
SOFTWARE
G A:2 , A A:3 , NA A:205
BINDING SITE FOR RESIDUE NA A 206
14
BC5
SOFTWARE
G B:11 , U B:12 , BA B:103
BINDING SITE FOR RESIDUE NA B 207
15
BC6
SOFTWARE
G D:20 , A D:21
BINDING SITE FOR RESIDUE NA D 208
16
BC7
SOFTWARE
BRU B:7 , BA B:104 , G C:14
BINDING SITE FOR RESIDUE NA C 209
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Show PDB file:
Asym.Unit (22 KB)
Header - Asym.Unit
Biol.Unit 1 (11 KB)
Header - Biol.Unit 1
Biol.Unit 2 (10 KB)
Header - Biol.Unit 2
Biol.Unit 3 (10 KB)
Header - Biol.Unit 3
Biol.Unit 4 (9 KB)
Header - Biol.Unit 4
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