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Asym. Unit
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Asym.Unit (56 KB)
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(1)
Title
:
COMPLEX OF THE KH3 AND KH4 DOMAINS OF FBP WITH A SINGLE_STRANDED 29MER DNA OLIGONUCLEOTIDE FROM THE FUSE ELEMENT OF THE C-MYC ONCOGENE
Authors
:
G. M. Clore, D. T. Braddock
Date
:
30 Nov 01 (Deposition) - 06 Mar 02 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B
Keywords
:
Single-Stranded Dna Binding Protein, Transcription Factor, Fbp, Fuse Element, C-Myc Oncogene, Transcription/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. T. Braddock, J. M. Louis, J. L. Baber, D. Levens, G. M. Clore
Structure And Dynamics Of Kh Domains From Fbp Bound To Single-Stranded Dna.
Nature V. 415 1051 2002
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
[
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]
Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_049679 (I126K, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_049679
I
399
K
FUBP1_HUMAN
Polymorphism
12748509
A
I
126
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: KH_TYPE_1 (-|-|A:5-66|A:104-170)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
KH_TYPE_1
PS50084
Type-1 KH domain profile.
FUBP1_HUMAN
100-164
185-251
275-339
376-443
2
-
-
A:5-66
A:104-170
[
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Exons
(5, 5)
Info
All Exons
Exon 1.11 (A:1-6)
Exon 1.12 (A:7-41)
Exon 1.13 (A:41-74)
Exon 1.14 (A:104-122)
Exon 1.15 (A:122-174)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.10/1.11
2: Boundary 1.11/1.12
3: Boundary 1.12/1.13
4: Boundary 1.13/1.14
5: Boundary 1.14/1.15
6: Boundary 1.15/1.16b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1e
ENST00000370768
1e
ENSE00001815368
chr1:
78444770-78444569
202
FUBP1_HUMAN
1-40
40
0
-
-
1.2
ENST00000370768
2
ENSE00001066871
chr1:
78435699-78435609
91
FUBP1_HUMAN
41-71
31
0
-
-
1.4
ENST00000370768
4
ENSE00001066882
chr1:
78433887-78433849
39
FUBP1_HUMAN
71-84
14
0
-
-
1.5
ENST00000370768
5
ENSE00001066879
chr1:
78433350-78433311
40
FUBP1_HUMAN
84-97
14
0
-
-
1.6a
ENST00000370768
6a
ENSE00001349606
chr1:
78432785-78432733
53
FUBP1_HUMAN
97-115
19
0
-
-
1.7
ENST00000370768
7
ENSE00001066887
chr1:
78432639-78432568
72
FUBP1_HUMAN
115-139
25
0
-
-
1.8
ENST00000370768
8
ENSE00001066874
chr1:
78432435-78432378
58
FUBP1_HUMAN
139-158
20
0
-
-
1.9
ENST00000370768
9
ENSE00002163081
chr1:
78430915-78430753
163
FUBP1_HUMAN
158-212
55
0
-
-
1.10
ENST00000370768
10
ENSE00001066888
chr1:
78430653-78430555
99
FUBP1_HUMAN
213-245
33
0
-
-
1.11
ENST00000370768
11
ENSE00001066872
chr1:
78430432-78430331
102
FUBP1_HUMAN
246-279
34
1
A:1-6
6
1.12
ENST00000370768
12
ENSE00001066883
chr1:
78430041-78429939
103
FUBP1_HUMAN
280-314
35
1
A:7-41
35
1.13
ENST00000370768
13
ENSE00001066884
chr1:
78429847-78429747
101
FUBP1_HUMAN
314-347
34
1
A:41-74
34
1.14
ENST00000370768
14
ENSE00001435529
chr1:
78429400-78429259
142
FUBP1_HUMAN
348-395
48
1
A:104-122
19
1.15
ENST00000370768
15
ENSE00001435707
chr1:
78428615-78428455
161
FUBP1_HUMAN
395-448
54
1
A:122-174
53
1.16b
ENST00000370768
16b
ENSE00001066870
chr1:
78426180-78426029
152
FUBP1_HUMAN
449-499
51
0
-
-
1.17
ENST00000370768
17
ENSE00001066877
chr1:
78425948-78425869
80
FUBP1_HUMAN
499-526
28
0
-
-
1.18
ENST00000370768
18
ENSE00001066876
chr1:
78422385-78422257
129
FUBP1_HUMAN
526-569
44
0
-
-
1.19d
ENST00000370768
19d
ENSE00001066889
chr1:
78421014-78420940
75
FUBP1_HUMAN
569-594
26
0
-
-
1.20a
ENST00000370768
20a
ENSE00001349579
chr1:
78414985-78414840
146
FUBP1_HUMAN
594-642
49
0
-
-
1.21b
ENST00000370768
21b
ENSE00001916670
chr1:
78414459-78414090
370
FUBP1_HUMAN
643-644
2
0
-
-
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1j4wa1 (A:1-74)
1b: SCOP_d1j4wa2 (A:104-174)
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Classes
(
)
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(
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(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Eukaryotic type KH-domain (KH-domain type I)
(51)
Superfamily
:
Eukaryotic type KH-domain (KH-domain type I)
(51)
Family
:
Eukaryotic type KH-domain (KH-domain type I)
(40)
Protein domain
:
Far upstream binding element, FBP
(3)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1j4wa1
A:1-74
1b
d1j4wa2
A:104-174
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1j4wA02 (A:104-174)
1b: CATH_1j4wA01 (A:1-74)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Ribosomal Protein S8; Chain: A, domain 1
(139)
Homologous Superfamily
:
[code=3.30.1370.10, no name defined]
(23)
Human (Homo sapiens)
(13)
1a
1j4wA02
A:104-174
1b
1j4wA01
A:1-74
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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