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1J47
Asym. Unit
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Asym.Unit (48 KB)
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(1)
Title
:
3D SOLUTION NMR STRUCTURE OF THE M9I MUTANT OF THE HMG-BOX DOMAIN OF THE HUMAN MALE SEX DETERMINING FACTOR SRY COMPLEXED TO DNA
Authors
:
G. M. Clore, E. C. Murphy
Date
:
23 Jul 01 (Deposition) - 03 Oct 01 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B,C
Keywords
:
Male Sex Determining Factor, Sry, Sex-Reversal Mutation, Dna Bending Mutant, Dipolar Couplings, Multidimensional Nmr, Transcription/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. C. Murphy, V. B. Zhurkin, J. M. Louis, G. Cornilescu, G. M. Clore
Structural Basis For Sry-Dependent 46-X, Y Sex Reversal: Modulation Of Dna Bending By A Naturally Occurring Point Mutation.
J. Mol. Biol. V. 312 481 2001
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
[
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]
Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(24, 24)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_003718 (V5A, chain A, )
02: VAR_003719 (V5L, chain A, )
03: VAR_003720 (R7G, chain A, )
04: VAR_003721 (I9I, chain A, )
05: VAR_017298 (I9R, chain A, )
06: VAR_017299 (F12V, chain A, )
07: VAR_003722 (I13T, chain A, )
08: VAR_017300 (R21S, chain A, )
09: VAR_003723 (M23T, chain A, )
10: VAR_017301 (N32Y, chain A, )
11: VAR_003724 (I35M, chain A, )
12: VAR_003725 (S36G, chain A, )
13: VAR_017302 (G40E, chain A, )
14: VAR_003726 (G40R, chain A, )
15: VAR_003727 (L46H, chain A, )
16: VAR_003728 (K51I, chain A, )
17: VAR_003729 (P53R, chain A, )
18: VAR_003730 (F54S, chain A, )
19: VAR_003731 (A58T, chain A, )
20: VAR_003732 (P70L, chain A, )
21: VAR_003733 (Y72C, chain A, )
22: VAR_017303 (Y72F, chain A, )
23: VAR_017304 (P76R, chain A, )
24: VAR_003734 (R78W, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_003718
V
60
A
SRY_HUMAN
Disease (SRXY1)
---
A
V
5
A
02
UniProt
VAR_003719
V
60
L
SRY_HUMAN
Disease (SRXY1)
---
A
V
5
L
03
UniProt
VAR_003720
R
62
G
SRY_HUMAN
Disease (SRXY1)
---
A
R
7
G
04
UniProt
VAR_003721
M
64
I
SRY_HUMAN
Disease (SRXY1)
---
A
I
9
I
05
UniProt
VAR_017298
M
64
R
SRY_HUMAN
Disease (SRXY1)
---
A
I
9
R
06
UniProt
VAR_017299
F
67
V
SRY_HUMAN
Disease (SRXY1)
---
A
F
12
V
07
UniProt
VAR_003722
I
68
T
SRY_HUMAN
Disease (SRXY1)
---
A
I
13
T
08
UniProt
VAR_017300
R
76
S
SRY_HUMAN
Disease (SRXY1)
---
A
R
21
S
09
UniProt
VAR_003723
M
78
T
SRY_HUMAN
Disease (SRXY1)
---
A
M
23
T
10
UniProt
VAR_017301
N
87
Y
SRY_HUMAN
Disease (SRXY1)
---
A
N
32
Y
11
UniProt
VAR_003724
I
90
M
SRY_HUMAN
Disease (SRXY1)
---
A
I
35
M
12
UniProt
VAR_003725
S
91
G
SRY_HUMAN
Disease (SRXY1)
---
A
S
36
G
13
UniProt
VAR_017302
G
95
E
SRY_HUMAN
Disease (SRXY1)
---
A
G
40
E
14
UniProt
VAR_003726
G
95
R
SRY_HUMAN
Disease (SRXY1)
---
A
G
40
R
15
UniProt
VAR_003727
L
101
H
SRY_HUMAN
Disease (SRXY1)
---
A
L
46
H
16
UniProt
VAR_003728
K
106
I
SRY_HUMAN
Disease (SRXY1)
---
A
K
51
I
17
UniProt
VAR_003729
P
108
R
SRY_HUMAN
Disease (SRXY1)
---
A
P
53
R
18
UniProt
VAR_003730
F
109
S
SRY_HUMAN
Disease (SRXY1)
---
A
F
54
S
19
UniProt
VAR_003731
A
113
T
SRY_HUMAN
Disease (SRXY1)
---
A
A
58
T
20
UniProt
VAR_003732
P
125
L
SRY_HUMAN
Disease (SRXY1)
---
A
P
70
L
21
UniProt
VAR_003733
Y
127
C
SRY_HUMAN
Disease (SRXY1)
---
A
Y
72
C
22
UniProt
VAR_017303
Y
127
F
SRY_HUMAN
Disease (SRXY1)
---
A
Y
72
F
23
UniProt
VAR_017304
P
131
R
SRY_HUMAN
Disease (SRXY1)
---
A
P
76
R
24
UniProt
VAR_003734
R
133
W
SRY_HUMAN
Disease (SRXY1)
---
A
R
78
W
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: HMG_BOX_2 (A:5-73)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HMG_BOX_2
PS50118
HMG boxes A and B DNA-binding domains profile.
SRY_HUMAN
60-128
1
A:5-73
[
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Exons
(1, 1)
Info
All Exons
Exon 1.1 (A:1-85)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000383070
1
ENSE00001494622
Y:2655740-2654896
845
SRY_HUMAN
1-236
236
1
A:1-85
85
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1j47a_ (A:)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
HMG-box
(49)
Superfamily
:
HMG-box
(49)
Family
:
HMG-box
(43)
Protein domain
:
SRY
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d1j47a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1j47A00 (A:1-85)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
DNA Binding (I), subunit A
(33)
Homologous Superfamily
:
DNA Binding (I), subunit A
(33)
Human (Homo sapiens)
(7)
1a
1j47A00
A:1-85
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asymmetric Unit 1
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