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1J3S
Asym. Unit
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Asym.Unit (585 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF REDUCED RECOMBINANT HUMAN CYTOCHROME C
Authors
:
W. -Y. Jeng, J. -H. Shiu, Y. -H. Tsai, W. -J. Chuang
Date
:
12 Feb 03 (Deposition) - 18 May 04 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Ferrocytochrome C, Electron Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. -Y. Jeng, J. -H. Shiu, Y. -H. Tsai, W. -J. Chuang
Solution Structure Of Reduced Recombinant Human Cytochrome C
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: HEME C (HECa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
HEC
1
Ligand/Ion
HEME C
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:14 , CYS A:17 , HIS A:18 , THR A:28 , PRO A:30 , LEU A:35 , ARG A:38 , THR A:40 , TYR A:46 , TYR A:48 , THR A:49 , TRP A:59 , TYR A:67 , LEU A:68 , THR A:78 , LYS A:79 , MET A:80 , PHE A:82 , ARG A:91
BINDING SITE FOR RESIDUE HEC A 105
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_044450 (G41S, chain A, )
2: VAR_048850 (K55R, chain A, )
3: VAR_002204 (M65L, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_044450
G
42
S
CYC_HUMAN
Disease (THC4)
---
A
G
41
S
2
UniProt
VAR_048850
K
56
R
CYC_HUMAN
Polymorphism
11548795
A
K
55
R
3
UniProt
VAR_002204
M
66
L
CYC_HUMAN
Unclassified
---
A
M
65
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: CYTC (A:1-102)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTC
PS51007
Cytochrome c family profile.
CYC_HUMAN
2-103
1
A:1-102
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Exons
(2, 2)
Info
All Exons
Exon 1.3 (A:1-56)
Exon 1.4d (A:56-104)
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All Exon Boundaries
1: Boundary 1.1a/1.3
2: Boundary 1.3/1.4d
3: Boundary 1.4d/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000305786
1a
ENSE00001286932
chr7:
25164980-25164819
162
CYC_HUMAN
-
0
0
-
-
1.3
ENST00000305786
3
ENSE00001147465
chr7:
25163746-25163570
177
CYC_HUMAN
1-57
57
1
A:1-56
56
1.4d
ENST00000305786
4d
ENSE00001207041
chr7:
25163468-25159710
3759
CYC_HUMAN
57-105
49
1
A:56-104
49
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1j3sa_ (A:)
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)
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)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Cytochrome c
(308)
Superfamily
:
Cytochrome c
(308)
Family
:
monodomain cytochrome c
(197)
Protein domain
:
Mitochondrial cytochrome c
(81)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d1j3sa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1j3sA00 (A:1-104)
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)
Organisms
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)
(
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cytochrome Bc1 Complex; Chain D, domain 2
(279)
Homologous Superfamily
:
Cytochrome c
(279)
Human (Homo sapiens)
(1)
1a
1j3sA00
A:1-104
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Protein
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Chain A
Asymmetric Unit 1
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