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1J2C
Asym. Unit
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Asym.Unit (43 KB)
Biol.Unit 1 (39 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF RAT HEME OXYGENASE-1 IN COMPLEX WITH BILIVERDIN IXALPHA-IRON CLUSTER
Authors
:
M. Sugishima, H. Sakamoto, M. Noguchi, K. Fukuyama
Date
:
29 Dec 02 (Deposition) - 02 Sep 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Enzyme-Product Complex, Bent Helix, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Sugishima, H. Sakamoto, Y. Higashimoto, M. Noguchi, K. Fukuyama
Crystal Structure Of Rat Heme Oxygenase-1 In Complex With Biliverdin-Iron Chelate: Conformational Change Of The Distal Helix During The Heme Cleavage Reaction.
J. Biol. Chem. V. 278 32352 2003
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: BILIVERDINE IX ALPHA (BLAa)
2a: FE (III) ION (FEa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BLA
1
Ligand/Ion
BILIVERDINE IX ALPHA
2
FE
1
Ligand/Ion
FE (III) ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:25 , BLA A:300
BINDING SITE FOR RESIDUE FE A 1300
2
AC2
SOFTWARE
LYS A:18 , HIS A:25 , GLN A:38 , TYR A:134 , THR A:135 , GLY A:139 , SER A:142 , GLY A:143 , ARG A:183 , PHE A:207 , ASN A:210 , FE A:1300 , HOH A:1374
BINDING SITE FOR RESIDUE BLA A 300
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: HEME_OXYGENASE (A:129-139)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HEME_OXYGENASE
PS00593
Heme oxygenase signature.
HMOX1_RAT
129-139
1
A:129-139
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Exons
(4, 4)
Info
All Exons
Exon 1.1 (A:7-8)
Exon 1.2 (A:8-48)
Exon 1.3b (A:49-212)
Exon 1.4 (A:213-222)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3b
4: Boundary 1.3b/1.4
5: Boundary 1.4/1.5a
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000019192
1
ENSRNOE00000437660
chr19:
13963139-13963277
139
HMOX1_RAT
1-8
8
1
A:7-8
2
1.2
ENSRNOT00000019192
2
ENSRNOE00000433615
chr19:
13965179-13965299
121
HMOX1_RAT
8-48
41
1
A:8-48
41
1.3b
ENSRNOT00000019192
3b
ENSRNOE00000135098
chr19:
13966126-13966617
492
HMOX1_RAT
49-212
164
1
A:49-212
164
1.4
ENSRNOT00000019192
4
ENSRNOE00000135373
chr19:
13968127-13968226
100
HMOX1_RAT
213-246
34
1
A:213-222
10
1.5a
ENSRNOT00000019192
5a
ENSRNOE00000265745
chr19:
13969266-13969955
690
HMOX1_RAT
246-289
44
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1j2ca_ (A:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Heme oxygenase-like
(107)
Superfamily
:
Heme oxygenase-like
(107)
Family
:
Eukaryotic type heme oxygenase
(69)
Protein domain
:
Heme oxygenase-1 (HO-1)
(49)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(25)
1a
d1j2ca_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1j2cA00 (A:7-222)
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Organisms
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Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Heme Oxygenase; Chain A
(84)
Homologous Superfamily
:
Heme Oxygenase; Chain A
(84)
Norway rat (Rattus norvegicus)
(13)
1a
1j2cA00
A:7-222
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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