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1J21
Asym. Unit
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Asym.Unit (261 KB)
Biol.Unit 1 (255 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS HB8 ARGININOSUCCINATE SYNTHETASE IN COMPLEX WITH ATP AND CITRULLINE
Authors
:
M. Goto, K. Hirotsu, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
24 Dec 02 (Deposition) - 22 Apr 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Ligase, Atp-Binding, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Genomics
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Goto, R. Omi, I. Miyahara, M. Sugahara, K. Hirotsu
Structures Of Argininosuccinate Synthetase In Enzyme-Atp-Substrates And Enzyme-Amp-Product Forms
J. Biol. Chem. V. 278 22964 2003
(for further references see the
PDB file header
)
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
1b: ADENOSINE-5'-TRIPHOSPHATE (ATPb)
1c: ADENOSINE-5'-TRIPHOSPHATE (ATPc)
1d: ADENOSINE-5'-TRIPHOSPHATE (ATPd)
2a: CITRULLINE (CIRa)
2b: CITRULLINE (CIRb)
2c: CITRULLINE (CIRc)
2d: CITRULLINE (CIRd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ATP
4
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
2
CIR
4
Ligand/Ion
CITRULLINE
[
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]
Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:6 , SER A:8 , GLY A:10 , LEU A:11 , ASP A:12 , THR A:13 , PHE A:31 , ALA A:33 , GLN A:37 , ARG A:92 , HIS A:113 , GLY A:114 , PHE A:125 , HOH A:1453
BINDING SITE FOR RESIDUE ATP A 510
2
AC2
SOFTWARE
ALA B:6 , SER B:8 , GLY B:10 , ASP B:12 , THR B:13 , PHE B:31 , ALA B:33 , GLN B:37 , HIS B:113 , GLY B:114 , PHE B:125 , HOH B:1334 , HOH B:1417 , HOH B:1435
BINDING SITE FOR RESIDUE ATP B 1510
3
AC3
SOFTWARE
ALA C:6 , SER C:8 , GLY C:10 , LEU C:11 , ASP C:12 , THR C:13 , PHE C:31 , THR C:32 , ALA C:33 , ARG C:92 , HIS C:113 , GLY C:114 , PHE C:125
BINDING SITE FOR RESIDUE ATP C 2510
4
AC4
SOFTWARE
ALA D:6 , TYR D:7 , SER D:8 , GLY D:10 , LEU D:11 , ASP D:12 , THR D:13 , PHE D:31 , ALA D:33 , GLN D:37 , ARG D:92 , HIS D:113 , GLY D:114 , PHE D:125 , HOH D:1355
BINDING SITE FOR RESIDUE ATP D 3510
5
AC5
SOFTWARE
TYR A:84 , THR A:88 , SER A:89 , ASN A:120 , ARG A:124 , SER A:173 , MET A:174 , ASP A:175 , SER A:182 , GLU A:184 , GLU A:258 , TYR A:270 , TYR A:310
BINDING SITE FOR RESIDUE CIR A 520
6
AC6
SOFTWARE
TYR B:84 , THR B:88 , SER B:89 , ASN B:120 , ARG B:124 , SER B:173 , MET B:174 , ASP B:175 , SER B:182 , GLU B:184 , GLU B:258 , TYR B:270 , TYR B:310
BINDING SITE FOR RESIDUE CIR B 1520
7
AC7
SOFTWARE
TYR C:84 , THR C:88 , SER C:89 , ASN C:120 , ASP C:121 , ARG C:124 , SER C:173 , MET C:174 , ASP C:175 , SER C:182 , GLU C:184 , GLU C:258 , TYR C:270 , TYR C:310
BINDING SITE FOR RESIDUE CIR C 2520
8
AC8
SOFTWARE
TYR D:84 , THR D:88 , SER D:89 , ASN D:120 , ARG D:124 , SER D:173 , MET D:174 , ASP D:175 , SER D:182 , GLU D:184 , GLU D:258 , TYR D:270 , TYR D:310
BINDING SITE FOR RESIDUE CIR D 3520
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: ARGININOSUCCIN_SYN_1 (A:6-14,B:6-14,C:6-14,D:6-14)
2: ARGININOSUCCIN_SYN_2 (A:114-125,B:114-125,C:114-125,D:11...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ARGININOSUCCIN_SYN_1
PS00564
Argininosuccinate synthase signature 1.
ASSY_THET8
6-14
4
A:6-14
B:6-14
C:6-14
D:6-14
2
ARGININOSUCCIN_SYN_2
PS00565
Argininosuccinate synthase signature 2.
ASSY_THET8
114-125
4
A:114-125
B:114-125
C:114-125
D:114-125
[
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1j21a2 (A:171-395)
1b: SCOP_d1j21b2 (B:171-395)
1c: SCOP_d1j21c2 (C:171-395)
1d: SCOP_d1j21d2 (D:171-395)
2a: SCOP_d1j21a1 (A:1-165)
2b: SCOP_d1j21b1 (B:1-165)
2c: SCOP_d1j21c1 (C:1-165)
2d: SCOP_d1j21d1 (D:1-165)
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)
(
)
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(
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)
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)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Argininosuccinate synthetase, C-terminal domain
(14)
Superfamily
:
Argininosuccinate synthetase, C-terminal domain
(14)
Family
:
Argininosuccinate synthetase, C-terminal domain
(12)
Protein domain
:
Argininosuccinate synthetase, C-terminal domain
(12)
Thermus thermophilus [TaxId: 274]
(7)
1a
d1j21a2
A:171-395
1b
d1j21b2
B:171-395
1c
d1j21c2
C:171-395
1d
d1j21d2
D:171-395
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Adenine nucleotide alpha hydrolase-like
(440)
Superfamily
:
Adenine nucleotide alpha hydrolases-like
(110)
Family
:
N-type ATP pyrophosphatases
(44)
Protein domain
:
Argininosuccinate synthetase, N-terminal domain
(12)
Thermus thermophilus [TaxId: 274]
(7)
2a
d1j21a1
A:1-165
2b
d1j21b1
B:1-165
2c
d1j21c1
C:1-165
2d
d1j21d1
D:1-165
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1j21A01 (A:1-171)
1b: CATH_1j21B01 (B:1-171)
1c: CATH_1j21C01 (C:1-171)
1d: CATH_1j21D01 (D:1-171)
2a: CATH_1j21A02 (A:172-395)
2b: CATH_1j21B02 (B:172-395)
2c: CATH_1j21C02 (C:172-395)
2d: CATH_1j21D02 (D:172-395)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1
(328)
Thermus thermophilus. Organism_taxid: 274.
(11)
1a
1j21A01
A:1-171
1b
1j21B01
B:1-171
1c
1j21C01
C:1-171
1d
1j21D01
D:1-171
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Argininosuccinate synthetase, chain A, domain 2
(13)
Homologous Superfamily
:
Argininosuccinate synthetase, chain A, domain 2
(13)
Thermus thermophilus. Organism_taxid: 274.
(7)
2a
1j21A02
A:172-395
2b
1j21B02
B:172-395
2c
1j21C02
C:172-395
2d
1j21D02
D:172-395
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Pfam Domains
(0, 0)
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