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1J0J
Asym. Unit
Info
Asym.Unit (210 KB)
Biol.Unit 1 (205 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF NEOPULLULANASE E357Q COMPLEX WITH MALTOTETRAOSE
Authors
:
H. Hondoh, T. Kuriki, Y. Matsuura
Date
:
14 Nov 02 (Deposition) - 28 Jan 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Beta-Alpha-Barrels, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Hondoh, T. Kuriki, Y. Matsuura
Three-Dimensional Structure And Substrate Binding Of Bacillus Stearothermophilus Neopullulanase
J. Mol. Biol. V. 326 177 2003
(for further references see the
PDB file header
)
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Hetero Components
(1, 8)
Info
All Hetero Components
1a: ALPHA-D-GLUCOSE (GLCa)
1b: ALPHA-D-GLUCOSE (GLCb)
1c: ALPHA-D-GLUCOSE (GLCc)
1d: ALPHA-D-GLUCOSE (GLCd)
1e: ALPHA-D-GLUCOSE (GLCe)
1f: ALPHA-D-GLUCOSE (GLCf)
1g: ALPHA-D-GLUCOSE (GLCg)
1h: ALPHA-D-GLUCOSE (GLCh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GLC
8
Ligand/Ion
ALPHA-D-GLUCOSE
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:207 , MET A:295 , ASP A:468 , ARG A:472 , GLC A:602
BINDING SITE FOR RESIDUE GLC A 601
2
AC2
SOFTWARE
TYR A:207 , HIS A:247 , PHE A:289 , ARG A:326 , ASP A:328 , VAL A:329 , GLN A:357 , HIS A:423 , ASP A:424 , GLC A:601 , GLC A:603
BINDING SITE FOR RESIDUE GLC A 602
3
AC3
SOFTWARE
PHE A:289 , VAL A:329 , GLN A:357 , GLC A:602 , GLC A:604 , TYR B:45
BINDING SITE FOR RESIDUE GLC A 603
4
AC4
SOFTWARE
TRP A:359 , GLC A:603 , HOH A:1069 , ARG B:83 , ASP B:110 , THR B:111 , ALA B:112
BINDING SITE FOR RESIDUE GLC A 604
5
AC5
SOFTWARE
TYR B:207 , MET B:295 , ASP B:468 , ARG B:472 , GLC B:606 , HOH B:1241
BINDING SITE FOR RESIDUE GLC B 605
6
AC6
SOFTWARE
TYR B:207 , HIS B:247 , PHE B:289 , ARG B:326 , ASP B:328 , VAL B:329 , GLN B:357 , HIS B:423 , ASP B:424 , GLC B:605 , GLC B:607
BINDING SITE FOR RESIDUE GLC B 606
7
AC7
SOFTWARE
TYR A:45 , PHE B:289 , VAL B:329 , GLN B:357 , GLC B:606 , GLC B:608 , HOH B:1232
BINDING SITE FOR RESIDUE GLC B 607
8
AC8
SOFTWARE
ARG A:83 , THR A:111 , ALA A:112 , HOH A:1008 , TRP B:359 , GLC B:607 , HOH B:1279
BINDING SITE FOR RESIDUE GLC B 608
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1j0ja2 (A:506-588)
1b: SCOP_d1j0jb2 (B:506-588)
2a: SCOP_d1j0ja1 (A:1-123)
2b: SCOP_d1j0jb1 (B:1-123)
3a: SCOP_d1j0ja3 (A:124-505)
3b: SCOP_d1j0jb3 (B:124-505)
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)
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)
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Glycosyl hydrolase domain
(397)
Superfamily
:
Glycosyl hydrolase domain
(397)
Family
:
alpha-Amylases, C-terminal beta-sheet domain
(272)
Protein domain
:
Neopullulanase
(4)
Bacillus stearothermophilus [TaxId: 1422]
(4)
1a
d1j0ja2
A:506-588
1b
d1j0jb2
B:506-588
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
E-set domains of sugar-utilizing enzymes
(147)
Protein domain
:
Neopullulanase, N-terminal domain
(4)
Bacillus stearothermophilus [TaxId: 1422]
(4)
2a
d1j0ja1
A:1-123
2b
d1j0jb1
B:1-123
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
Amylase, catalytic domain
(385)
Protein domain
:
Neopullulanase, central domain
(4)
Bacillus stearothermophilus [TaxId: 1422]
(4)
3a
d1j0ja3
A:124-505
3b
d1j0jb3
B:124-505
[
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1j0jA02 (A:126-245,A:300-505)
1b: CATH_1j0jB02 (B:126-245,B:300-505)
2a: CATH_1j0jA04 (A:506-588)
2b: CATH_1j0jB04 (B:506-588)
3a: CATH_1j0jA01 (A:1-125)
3b: CATH_1j0jB01 (B:1-125)
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)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Geobacillus stearothermophilus. Organism_taxid: 1422.
(6)
1a
1j0jA02
A:126-245,A:300-505
1b
1j0jB02
B:126-245,B:300-505
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Golgi alpha-mannosidase II
(346)
Geobacillus stearothermophilus. Organism_taxid: 1422.
(6)
2a
1j0jA04
A:506-588
2b
1j0jB04
B:506-588
Homologous Superfamily
:
Immunoglobulins
(2282)
Geobacillus stearothermophilus. Organism_taxid: 1422.
(6)
3a
1j0jA01
A:1-125
3b
1j0jB01
B:1-125
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (210 KB)
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