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1J0D
Biol. Unit 2
Info
Asym.Unit (238 KB)
Biol.Unit 1 (114 KB)
Biol.Unit 2 (122 KB)
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(1)
Title
:
ACC DEAMINASE MUTANT COMPLEXED WITH ACC
Authors
:
T. Ose, A. Fujino, M. Yao, M. Honma, I. Tanaka
Date
:
12 Nov 02 (Deposition) - 12 May 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Plp Dependent B Group, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Ose, A. Fujino, M. Yao, N. Watanabe, M. Honma, I. Tanaka
Reaction Intermediate Structures Of 1-Aminocyclopropane-1-Carboxylate Deaminase: Insight Into Plp-Dependent Cyclopropane Ring-Opening Reaction
J. Biol. Chem. V. 278 41069 2003
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: N-[3-HYDROXY-2-METHYL-5-PHOSPHONOO... (5PAa)
1b: N-[3-HYDROXY-2-METHYL-5-PHOSPHONOO... (5PAb)
1c: N-[3-HYDROXY-2-METHYL-5-PHOSPHONOO... (5PAc)
1d: N-[3-HYDROXY-2-METHYL-5-PHOSPHONOO... (5PAd)
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No.
Name
Count
Type
Full Name
1
5PA
2
Ligand/Ion
N-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-Y-LMETHYL]-1-AMINO-CYCLOPROPANECARBOXYLIC ACID
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Sites
(2, 2)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
ASN C:50 , LYS C:54 , SER C:78 , ASN C:79 , GLN C:80 , GLY C:164 , CYS C:200 , VAL C:201 , THR C:202 , GLY C:203 , THR C:205 , TYR C:295 , GLU C:296 , LEU C:323 , GLY C:324 , GLY C:325 , HOH C:1603 , HOH C:1611 , HOH C:1734 , HOH C:1736
BINDING SITE FOR RESIDUE 5PA C 1601
2
AC4
SOFTWARE
ASN D:50 , LYS D:54 , SER D:78 , ASN D:79 , GLN D:80 , ALA D:163 , GLY D:164 , VAL D:201 , THR D:202 , GLY D:203 , SER D:204 , THR D:205 , TYR D:295 , GLU D:296 , LEU D:323 , GLY D:324 , GLY D:325 , HOH D:1710 , HOH D:1760 , HOH D:1820
BINDING SITE FOR RESIDUE 5PA D 1701
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1j0da_ (A:)
1b: SCOP_d1j0db_ (B:)
1c: SCOP_d1j0dc_ (C:)
1d: SCOP_d1j0dd_ (D:)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Tryptophan synthase beta subunit-like PLP-dependent enzymes
(165)
Superfamily
:
Tryptophan synthase beta subunit-like PLP-dependent enzymes
(165)
Family
:
Tryptophan synthase beta subunit-like PLP-dependent enzymes
(120)
Protein domain
:
1-aminocyclopropane-1-carboxylate deaminase
(12)
Yeast (Hansenula saturnus) [TaxId: 4906]
(4)
1a
d1j0da_
A:
1b
d1j0db_
B:
1c
d1j0dc_
C:
1d
d1j0dd_
D:
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1j0dA01 (A:1-45,A:168-341)
1b: CATH_1j0dA02 (A:66-167)
1c: CATH_1j0dB02 (B:66-167)
1d: CATH_1j0dC02 (C:66-167)
1e: CATH_1j0dD02 (D:66-167)
1f: CATH_1j0dB01 (B:1-45,B:168-341)
1g: CATH_1j0dC01 (C:1-45,C:168-341)
1h: CATH_1j0dD01 (D:1-45,D:168-341)
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Organisms
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(
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1100, no name defined]
(77)
Williopsis saturnus. Organism_taxid: 4906.
(4)
1a
1j0dA01
A:1-45,A:168-341
1b
1j0dA02
A:66-167
1c
1j0dB02
B:66-167
1d
1j0dC02
C:66-167
1e
1j0dD02
D:66-167
1f
1j0dB01
B:1-45,B:168-341
1g
1j0dC01
C:1-45,C:168-341
1h
1j0dD01
D:1-45,D:168-341
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (238 KB)
Header - Asym.Unit
Biol.Unit 1 (114 KB)
Header - Biol.Unit 1
Biol.Unit 2 (122 KB)
Header - Biol.Unit 2
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