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1J0C
Biol. Unit 2
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Asym.Unit (225 KB)
Biol.Unit 1 (110 KB)
Biol.Unit 2 (114 KB)
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(1)
Title
:
ACC DEAMINASE MUTATED TO CATALYTIC RESIDUE
Authors
:
T. Ose, A. Fujino, M. Yao, M. Honma, I. Tanaka
Date
:
12 Nov 02 (Deposition) - 12 May 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Plp Dependent B Group, Lyase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
T. Ose, A. Fujino, M. Yao, N. Watanabe, M. Honma, I. Tanaka
Reaction Intermediate Structures Of 1-Aminocyclopropane-1-Carboxylate Deaminase: Insight Into Plp-Dependent Cyclopropane Ring-Opening Reaction
J. Biol. Chem. V. 278 41069 2003
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
1b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
1c: PYRIDOXAL-5'-PHOSPHATE (PLPc)
1d: PYRIDOXAL-5'-PHOSPHATE (PLPd)
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Label:
No.
Name
Count
Type
Full Name
1
PLP
2
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
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Sites
(2, 2)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
ASN C:50 , LYS C:54 , ASN C:79 , CYS C:200 , VAL C:201 , THR C:202 , GLY C:203 , SER C:204 , THR C:205 , TYR C:295 , GLU C:296 , LEU C:323 , GLY C:324 , GLY C:325 , HOH C:676 , HOH C:731 , HOH C:733
BINDING SITE FOR RESIDUE PLP C 601
2
AC4
SOFTWARE
ASN D:50 , LYS D:54 , ASN D:79 , CYS D:200 , VAL D:201 , THR D:202 , GLY D:203 , SER D:204 , THR D:205 , TYR D:295 , GLU D:296 , LEU D:323 , GLY D:324 , GLY D:325 , HOH D:708 , HOH D:773
BINDING SITE FOR RESIDUE PLP D 701
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1j0ca_ (A:)
1b: SCOP_d1j0cb_ (B:)
1c: SCOP_d1j0cc_ (C:)
1d: SCOP_d1j0cd_ (D:)
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Protein Domains
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Organisms
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Tryptophan synthase beta subunit-like PLP-dependent enzymes
(165)
Superfamily
:
Tryptophan synthase beta subunit-like PLP-dependent enzymes
(165)
Family
:
Tryptophan synthase beta subunit-like PLP-dependent enzymes
(120)
Protein domain
:
1-aminocyclopropane-1-carboxylate deaminase
(12)
Yeast (Hansenula saturnus) [TaxId: 4906]
(4)
1a
d1j0ca_
A:
1b
d1j0cb_
B:
1c
d1j0cc_
C:
1d
d1j0cd_
D:
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1j0cA01 (A:1-45,A:168-341)
1b: CATH_1j0cC01 (C:1-45,C:168-341)
1c: CATH_1j0cD01 (D:1-45,D:168-341)
1d: CATH_1j0cA02 (A:66-167)
1e: CATH_1j0cB02 (B:66-167)
1f: CATH_1j0cC02 (C:66-167)
1g: CATH_1j0cD02 (D:66-167)
1h: CATH_1j0cB01 (B:1-45,B:168-341)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1100, no name defined]
(77)
Williopsis saturnus. Organism_taxid: 4906.
(4)
1a
1j0cA01
A:1-45,A:168-341
1b
1j0cC01
C:1-45,C:168-341
1c
1j0cD01
D:1-45,D:168-341
1d
1j0cA02
A:66-167
1e
1j0cB02
B:66-167
1f
1j0cC02
C:66-167
1g
1j0cD02
D:66-167
1h
1j0cB01
B:1-45,B:168-341
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (225 KB)
Header - Asym.Unit
Biol.Unit 1 (110 KB)
Header - Biol.Unit 1
Biol.Unit 2 (114 KB)
Header - Biol.Unit 2
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