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1IYF
Asym. Unit
Info
Asym.Unit (211 KB)
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Models
(10 )
Title
:
SOLUTION STRUCTURE OF UBIQUITIN-LIKE DOMAIN OF HUMAN PARKIN
Authors
:
E. Sakata, Y. Yamaguchi, E. Kurimoto, J. Kikuchi, S. Yokoyama, H. Kawahara, H. Yokosawa, N. Hattori, Y. Mizuno, K. Tanaka, K. Kato, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
13 Aug 02 (Deposition) - 25 Mar 03 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (10 x)
Keywords
:
Ubiquitin Fold, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Genomics, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Sakata, Y. Yamaguchi, E. Kurimoto, J. Kikuchi, S. Yokoyama, S. Yamada, H. Kawahara, H. Yokosawa, N. Hattori, Y. Mizuno, K. Tanaka, K. Kato
Parkin Binds The Rpn10 Subunit Of 26S Proteasomes Through Its Ubiquitin-Like Domain
Embo Rep. V. 4 301 2003
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
[
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SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_019733 (V15M, chain A, )
2: VAR_019734 (R33Q, chain A, )
3: VAR_019735 (P37L, chain A, )
4: VAR_019736 (R42P, chain A, )
5: VAR_019737 (A46P, chain A, )
6: VAR_070078 (V56E, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_019733
V
15
M
PRKN2_HUMAN
Disease (PARK2)
---
A
V
15
M
2
UniProt
VAR_019734
R
33
Q
PRKN2_HUMAN
Disease (PARK2)
---
A
R
33
Q
3
UniProt
VAR_019735
P
37
L
PRKN2_HUMAN
Disease (PARK2)
148990138
A
P
37
L
4
UniProt
VAR_019736
R
42
P
PRKN2_HUMAN
Disease (PARK2)
---
A
R
42
P
5
UniProt
VAR_019737
A
46
P
PRKN2_HUMAN
Disease (PARK2)
---
A
A
46
P
6
UniProt
VAR_070078
V
56
E
PRKN2_HUMAN
Disease (PARK2)
---
A
V
56
E
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: UBIQUITIN_2 (A:1-72)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UBIQUITIN_2
PS50053
Ubiquitin domain profile.
PRKN_HUMAN
1-72
1
A:1-72
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Exons
(3, 3)
Info
All Exons
Exon 1.1a (A:1-3)
Exon 1.2b (A:3-57)
Exon 1.3 (A:58-76)
View:
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2b
3: Boundary 1.2b/1.3
4: Boundary 1.3/1.4
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000366898
1a
ENSE00001442937
chr6:
163148803-163148694
110
PRKN_HUMAN
1-3
3
1
A:1-3
3
1.2b
ENST00000366898
2b
ENSE00002153621
chr6:
162864505-162864342
164
PRKN_HUMAN
3-57
55
1
A:3-57
55
1.3
ENST00000366898
3
ENSE00002144972
chr6:
162683797-162683557
241
PRKN_HUMAN
58-138
81
1
A:58-76
19
1.4
ENST00000366898
4
ENSE00002168037
chr6:
162622284-162622163
122
PRKN_HUMAN
138-178
41
0
-
-
1.5
ENST00000366898
5
ENSE00002195412
chr6:
162475206-162475123
84
PRKN_HUMAN
179-206
28
0
-
-
1.6
ENST00000366898
6
ENSE00002151207
chr6:
162394449-162394334
116
PRKN_HUMAN
207-245
39
0
-
-
1.7
ENST00000366898
7
ENSE00002169394
chr6:
162206940-162206804
137
PRKN_HUMAN
245-291
47
0
-
-
1.9b
ENST00000366898
9b
ENSE00001303667
chr6:
161990448-161990387
62
PRKN_HUMAN
291-311
21
0
-
-
1.10
ENST00000366898
10
ENSE00001305782
chr6:
161970035-161969886
150
PRKN_HUMAN
312-361
50
0
-
-
1.12
ENST00000366898
12
ENSE00002160695
chr6:
161807909-161807826
84
PRKN_HUMAN
362-389
28
0
-
-
1.13
ENST00000366898
13
ENSE00001306985
chr6:
161781237-161781120
118
PRKN_HUMAN
390-429
40
0
-
-
1.14d
ENST00000366898
14d
ENSE00001442933
chr6:
161771243-161768452
2792
PRKN_HUMAN
429-465
37
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1iyfa_ (A:)
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Classes
(
)
(
)
Folds
(
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(
)
Superfamilies
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Ubiquitin-like
(546)
Family
:
Ubiquitin-related
(337)
Protein domain
:
Ubiquitin-like domain of parkin
(3)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1iyfa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1iyfA00 (A:1-76)
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Organisms
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)
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Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
(286)
Human (Homo sapiens)
(177)
1a
1iyfA00
A:1-76
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Pfam Domains
(0, 0)
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Protein
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Chain A
Asymmetric Unit 1
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Asym.Unit (211 KB)
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