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1IXO
Asym. Unit
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Asym.Unit (155 KB)
Biol.Unit 1 (297 KB)
Biol.Unit 2 (77 KB)
Biol.Unit 3 (77 KB)
Biol.Unit 4 (77 KB)
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(1)
Title
:
ENZYME-ANALOGUE SUBSTRATE COMPLEX OF PYRIDOXINE 5'-PHOSPHATE SYNTHASE
Authors
:
M. Garrido-Franco, B. Laber, R. Huber, T. Clausen
Date
:
28 Jun 02 (Deposition) - 11 Feb 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (2x)
Biol. Unit 2: B,C (1x)
Biol. Unit 3: A (2x)
Biol. Unit 4: D (2x)
Keywords
:
Tim Barrel, Enzyme-Ligand Complex, Open-Closed Transition, Biosynthetic Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Garrido-Franco, B. Laber, R. Huber, T. Clausen
Enzyme-Ligand Complexes Of Pyridoxine 5'-Phosphate Synthase Implications For Substrate Binding And Catalysis
J. Mol. Biol. V. 321 601 2002
(for further references see the
PDB file header
)
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Hetero Components
(1, 5)
Info
All Hetero Components
1a: SN-GLYCEROL-3-PHOSPHATE (G3Pa)
1b: SN-GLYCEROL-3-PHOSPHATE (G3Pb)
1c: SN-GLYCEROL-3-PHOSPHATE (G3Pc)
1d: SN-GLYCEROL-3-PHOSPHATE (G3Pd)
1e: SN-GLYCEROL-3-PHOSPHATE (G3Pe)
View:
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Label:
No.
Name
Count
Type
Full Name
1
G3P
5
Ligand/Ion
SN-GLYCEROL-3-PHOSPHATE
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:9 , ARG A:20 , THR A:43 , GLU A:72 , HIS A:193 , GLY A:194 , ASN A:213 , ILE A:214 , GLY A:215 , HIS A:216 , HOH A:1025 , HOH A:1034 , HOH A:1054
BINDING SITE FOR RESIDUE G3P A 1001
2
AC2
SOFTWARE
ASN B:9 , GLU B:72 , GLU B:153 , HIS B:193 , GLY B:194 , ASN B:213 , ILE B:214 , GLY B:215 , HIS B:216 , HOH B:1024 , HOH B:1030 , HOH B:1047 , HOH B:1069 , HOH B:1073 , ARG C:20
BINDING SITE FOR RESIDUE G3P B 1002
3
AC3
SOFTWARE
ARG B:20 , ASN C:9 , THR C:43 , GLU C:72 , HIS C:193 , GLY C:194 , ASN C:213 , ILE C:214 , GLY C:215 , HIS C:216 , G3P C:1005 , HOH C:1016 , HOH C:1036
BINDING SITE FOR RESIDUE G3P C 1003
4
AC4
SOFTWARE
ASN D:9 , ARG D:20 , GLU D:72 , GLU D:153 , HIS D:193 , GLY D:194 , ASN D:213 , ILE D:214 , GLY D:215 , HIS D:216 , HOH D:1014 , HOH D:1017 , HOH D:1026
BINDING SITE FOR RESIDUE G3P D 1004
5
AC5
SOFTWARE
ARG B:20 , ASP C:11 , HIS C:12 , HIS C:45 , ARG C:47 , HIS C:52 , GLU C:72 , HIS C:193 , G3P C:1003
BINDING SITE FOR RESIDUE G3P C 1005
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SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_PDXJ_ECOLI_001 (G194S, chain A/B/C/D, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_PDXJ_ECOLI_001
*
G
194
S
PDXJ_ECOLI
---
---
A/B/C/D
G
194
S
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1ixoa_ (A:)
1b: SCOP_d1ixob_ (B:)
1c: SCOP_d1ixoc_ (C:)
1d: SCOP_d1ixod_ (D:)
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Protein Domains
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Organisms
(
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Pyridoxine 5'-phosphate synthase
(11)
Family
:
Pyridoxine 5'-phosphate synthase
(8)
Protein domain
:
Pyridoxine 5'-phosphate synthase
(7)
Escherichia coli [TaxId: 562]
(7)
1a
d1ixoa_
A:
1b
d1ixob_
B:
1c
d1ixoc_
C:
1d
d1ixod_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1ixoA00 (A:2-243)
1b: CATH_1ixoB00 (B:2-243)
1c: CATH_1ixoC00 (C:2-243)
1d: CATH_1ixoD00 (D:2-243)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Escherichia coli. Organism_taxid: 562.
(43)
1a
1ixoA00
A:2-243
1b
1ixoB00
B:2-243
1c
1ixoC00
C:2-243
1d
1ixoD00
D:2-243
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (155 KB)
Header - Asym.Unit
Biol.Unit 1 (297 KB)
Header - Biol.Unit 1
Biol.Unit 2 (77 KB)
Header - Biol.Unit 2
Biol.Unit 3 (77 KB)
Header - Biol.Unit 3
Biol.Unit 4 (77 KB)
Header - Biol.Unit 4
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