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1IWA
Asym. Unit
Info
Asym.Unit (850 KB)
Biol.Unit 1 (841 KB)
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(1)
Title
:
RUBISCO FROM GALDIERIA PARTITA
Authors
:
Y. Okano, E. Mizohata, Y. Xie, H. Matsumura, H. Sugawara, T. Inoue, A. Yokota, Y. Kai
Date
:
30 Apr 02 (Deposition) - 30 Apr 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P (1x)
Keywords
:
Rubisco, Photosynthesis, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Okano, E. Mizohata, Y. Xie, H. Matsumura, H. Sugawara, T. Inoue, A. Yokota, Y. Kai
X-Ray Structure Of Galdieria Rubisco Complexed With One Sulfate Ion Per Active Site
Febs Lett. V. 527 33 2002
(for further references see the
PDB file header
)
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Hetero Components
(1, 8)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
View:
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Label:
No.
Name
Count
Type
Full Name
1
SO4
8
Ligand/Ion
SULFATE ION
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:175 , LYS A:334 , SER A:379 , GLY A:381 , GLY A:403 , GLY A:404 , HOH A:4004 , HOH A:4237 , THR I:65
BINDING SITE FOR RESIDUE SO4 A 4001
2
AC2
SOFTWARE
LYS C:175 , LYS C:334 , GLY C:380 , GLY C:381 , GLY C:403 , GLY C:404 , HOH C:4121 , THR O:65 , TRP O:66
BINDING SITE FOR RESIDUE SO4 C 4002
3
AC3
SOFTWARE
LYS E:175 , LYS E:334 , GLY E:381 , GLY E:403 , GLY E:404 , HOH E:4017 , HOH E:4069 , THR M:65 , TRP M:66
BINDING SITE FOR RESIDUE SO4 E 4003
4
AC4
SOFTWARE
LYS G:175 , LYS G:334 , GLY G:381 , GLY G:403 , GLY G:404 , HOH G:4019 , THR K:65 , TRP K:66
BINDING SITE FOR RESIDUE SO4 G 4004
5
AC5
SOFTWARE
THR A:65 , TRP A:66 , LYS I:175 , LYS I:334 , GLY I:381 , GLY I:403 , GLY I:404 , HOH I:4014 , HOH I:4065
BINDING SITE FOR RESIDUE SO4 I 4005
6
AC6
SOFTWARE
THR E:65 , TRP E:66 , LYS M:175 , LYS M:334 , GLY M:380 , GLY M:381 , GLY M:403 , GLY M:404 , HOH M:4007 , HOH M:4008
BINDING SITE FOR RESIDUE SO4 M 4006
7
AC7
SOFTWARE
THR C:65 , TRP C:66 , LYS O:175 , LYS O:334 , GLY O:381 , GLY O:403 , GLY O:404 , HOH O:4016 , HOH O:4075 , HOH O:4086
BINDING SITE FOR RESIDUE SO4 O 4007
8
AC8
SOFTWARE
THR G:65 , TRP G:66 , LYS K:175 , LYS K:334 , GLY K:380 , GLY K:381 , GLY K:403 , GLY K:404 , HOH K:4067
BINDING SITE FOR RESIDUE SO4 K 4008
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 24)
Info
All SCOP Domains
1a: SCOP_d1iwaa2 (A:6-149)
1b: SCOP_d1iwam2 (M:6-149)
1c: SCOP_d1iwao2 (O:6-149)
1d: SCOP_d1iwac2 (C:6-149)
1e: SCOP_d1iwae2 (E:6-149)
1f: SCOP_d1iwag2 (G:6-149)
1g: SCOP_d1iwai2 (I:6-149)
1h: SCOP_d1iwak2 (K:6-149)
2a: SCOP_d1iwab_ (B:)
2b: SCOP_d1iwan_ (N:)
2c: SCOP_d1iwap_ (P:)
2d: SCOP_d1iwad_ (D:)
2e: SCOP_d1iwaf_ (F:)
2f: SCOP_d1iwah_ (H:)
2g: SCOP_d1iwaj_ (J:)
2h: SCOP_d1iwal_ (L:)
3a: SCOP_d1iwaa1 (A:150-478)
3b: SCOP_d1iwam1 (M:150-478)
3c: SCOP_d1iwao1 (O:150-478)
3d: SCOP_d1iwac1 (C:150-478)
3e: SCOP_d1iwae1 (E:150-478)
3f: SCOP_d1iwag1 (G:150-478)
3g: SCOP_d1iwai1 (I:150-478)
3h: SCOP_d1iwak1 (K:150-478)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RuBisCO, large subunit, small (N-terminal) domain
(66)
Family
:
Ribulose 1,5-bisphosphate carboxylase-oxygenase
(39)
Protein domain
:
Ribulose 1,5-bisphosphate carboxylase-oxygenase
(39)
Galdieria partita [TaxId: 83374]
(2)
1a
d1iwaa2
A:6-149
1b
d1iwam2
M:6-149
1c
d1iwao2
O:6-149
1d
d1iwac2
C:6-149
1e
d1iwae2
E:6-149
1f
d1iwag2
G:6-149
1g
d1iwai2
I:6-149
1h
d1iwak2
K:6-149
Fold
:
RuBisCO, small subunit
(44)
Superfamily
:
RuBisCO, small subunit
(44)
Family
:
RuBisCO, small subunit
(44)
Protein domain
:
Ribulose 1,5-bisphosphate carboxylase-oxygenase
(28)
Galdieria partita [TaxId: 83374]
(2)
2a
d1iwab_
B:
2b
d1iwan_
N:
2c
d1iwap_
P:
2d
d1iwad_
D:
2e
d1iwaf_
F:
2f
d1iwah_
H:
2g
d1iwaj_
J:
2h
d1iwal_
L:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
RuBisCo, C-terminal domain
(66)
Family
:
RuBisCo, large subunit, C-terminal domain
(56)
Protein domain
:
Ribulose 1,5-bisphosphate carboxylase-oxygenase
(40)
Galdieria partita [TaxId: 83374]
(2)
3a
d1iwaa1
A:150-478
3b
d1iwam1
M:150-478
3c
d1iwao1
O:150-478
3d
d1iwac1
C:150-478
3e
d1iwae1
E:150-478
3f
d1iwag1
G:150-478
3g
d1iwai1
I:150-478
3h
d1iwak1
K:150-478
[
close SCOP info
]
CATH Domains
(3, 24)
Info
all CATH domains
1a: CATH_1iwaA01 (A:22-148)
1b: CATH_1iwaC01 (C:22-148)
1c: CATH_1iwaE01 (E:22-148)
1d: CATH_1iwaG01 (G:22-148)
1e: CATH_1iwaI01 (I:22-148)
1f: CATH_1iwaK01 (K:22-148)
1g: CATH_1iwaM01 (M:22-148)
1h: CATH_1iwaO01 (O:22-148)
2a: CATH_1iwaB00 (B:8-155)
2b: CATH_1iwaD00 (D:8-155)
2c: CATH_1iwaF00 (F:8-155)
2d: CATH_1iwaH00 (H:8-155)
2e: CATH_1iwaJ00 (J:8-155)
2f: CATH_1iwaL00 (L:8-155)
2g: CATH_1iwaN00 (N:8-155)
2h: CATH_1iwaP00 (P:8-155)
3a: CATH_1iwaA02 (A:149-462)
3b: CATH_1iwaC02 (C:149-462)
3c: CATH_1iwaE02 (E:149-462)
3d: CATH_1iwaG02 (G:149-462)
3e: CATH_1iwaI02 (I:149-462)
3f: CATH_1iwaK02 (K:149-462)
3g: CATH_1iwaM02 (M:149-462)
3h: CATH_1iwaO02 (O:149-462)
View:
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)
(
)
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(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.150, no name defined]
(49)
Galdieria partita. Organism_taxid: 83374.
(1)
1a
1iwaA01
A:22-148
1b
1iwaC01
C:22-148
1c
1iwaE01
E:22-148
1d
1iwaG01
G:22-148
1e
1iwaI01
I:22-148
1f
1iwaK01
K:22-148
1g
1iwaM01
M:22-148
1h
1iwaO01
O:22-148
Topology
:
Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase
(42)
Homologous Superfamily
:
[code=3.30.190.10, no name defined]
(35)
Galdieria partita. Organism_taxid: 83374.
(1)
2a
1iwaB00
B:8-155
2b
1iwaD00
D:8-155
2c
1iwaF00
F:8-155
2d
1iwaH00
H:8-155
2e
1iwaJ00
J:8-155
2f
1iwaL00
L:8-155
2g
1iwaN00
N:8-155
2h
1iwaP00
P:8-155
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Rubisco
(49)
Galdieria partita. Organism_taxid: 83374.
(1)
3a
1iwaA02
A:149-462
3b
1iwaC02
C:149-462
3c
1iwaE02
E:149-462
3d
1iwaG02
G:149-462
3e
1iwaI02
I:149-462
3f
1iwaK02
K:149-462
3g
1iwaM02
M:149-462
3h
1iwaO02
O:149-462
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Asym.Unit (850 KB)
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