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1IVE
Asym. Unit
Info
Asym.Unit (171 KB)
Biol.Unit 1 (318 KB)
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(1)
Title
:
STRUCTURES OF AROMATIC INHIBITORS OF INFLUENZA VIRUS NEURAMINIDASE
Authors
:
M. J. Jedrzejas, M. Luo
Date
:
12 Dec 94 (Deposition) - 31 Mar 95 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Hydrolase (O-Glycosyl)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. J. Jedrzejas, S. Singh, W. J. Brouillette, W. G. Laver, G. M. Air, M. Luo
Structures Of Aromatic Inhibitors Of Influenza Virus Neuraminidase.
Biochemistry V. 34 3144 1995
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(8, 32)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: ALPHA-L-FUCOSE (FUCa)
4a: BETA-L-FUCOSE (FULa)
5a: ALPHA-D-MANNOSE (MANa)
5b: ALPHA-D-MANNOSE (MANb)
5c: ALPHA-D-MANNOSE (MANc)
5d: ALPHA-D-MANNOSE (MANd)
5e: ALPHA-D-MANNOSE (MANe)
5f: ALPHA-D-MANNOSE (MANf)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
6f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6g: N-ACETYL-D-GLUCOSAMINE (NAGg)
6h: N-ACETYL-D-GLUCOSAMINE (NAGh)
6i: N-ACETYL-D-GLUCOSAMINE (NAGi)
6j: N-ACETYL-D-GLUCOSAMINE (NAGj)
6k: N-ACETYL-D-GLUCOSAMINE (NAGk)
6l: N-ACETYL-D-GLUCOSAMINE (NAGl)
6m: N-ACETYL-D-GLUCOSAMINE (NAGm)
6n: N-ACETYL-D-GLUCOSAMINE (NAGn)
7a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
7b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
8a: 4-(ACETYLAMINO)-3-AMINO BENZOIC AC... (ST3a)
8b: 4-(ACETYLAMINO)-3-AMINO BENZOIC AC... (ST3b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
4
Ligand/Ion
BETA-D-MANNOSE
2
CA
2
Ligand/Ion
CALCIUM ION
3
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
4
FUL
1
Ligand/Ion
BETA-L-FUCOSE
5
MAN
6
Ligand/Ion
ALPHA-D-MANNOSE
6
NAG
14
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
NDG
2
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
8
ST3
2
Ligand/Ion
4-(ACETYLAMINO)-3-AMINO BENZOIC ACID
[
close Hetero Component info
]
Sites
(34, 34)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CAT (AUTHOR)
20: CC1 (SOFTWARE)
21: CC2 (SOFTWARE)
22: CC3 (SOFTWARE)
23: CC4 (SOFTWARE)
24: CC5 (SOFTWARE)
25: CC6 (SOFTWARE)
26: CC7 (SOFTWARE)
27: CC8 (SOFTWARE)
28: CC9 (SOFTWARE)
29: CT2 (UNKNOWN)
30: DC1 (SOFTWARE)
31: DC2 (SOFTWARE)
32: DC3 (SOFTWARE)
33: DC4 (SOFTWARE)
34: DC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:83 , ASN A:86 , SER A:88 , NAG A:473 , NAG A:484 , NDG A:485
BINDING SITE FOR RESIDUE NAG A 472
02
AC2
SOFTWARE
GLU A:83 , NAG A:472
BINDING SITE FOR RESIDUE NAG A 473
03
AC3
SOFTWARE
ASN A:146 , ASP A:147 , TRP A:437 , ILE A:469 , NAG A:475 , FUL A:477
BINDING SITE FOR RESIDUE NAG A 474
04
AC4
SOFTWARE
NAG A:474 , BMA A:476 , FUL A:477
BINDING SITE FOR RESIDUE NAG A 475
05
AC5
SOFTWARE
NAG A:475 , NAG A:479 , MAN B:481
BINDING SITE FOR RESIDUE BMA A 476
06
AC6
SOFTWARE
ASP A:147 , NAG A:474 , NAG A:475 , MAN B:481 , MAN B:482
BINDING SITE FOR RESIDUE FUL A 477
07
AC7
SOFTWARE
ASP A:197 , ASN A:200 , NAG A:479 , GLY B:454 , THR B:455
BINDING SITE FOR RESIDUE NAG A 478
08
AC8
SOFTWARE
BMA A:476 , NAG A:478 , BMA A:480 , THR B:455 , MAN B:481
BINDING SITE FOR RESIDUE NAG A 479
09
AC9
SOFTWARE
NAG A:479 , MAN B:481 , MAN B:483
BINDING SITE FOR RESIDUE BMA A 480
10
BC1
SOFTWARE
BMA A:476 , FUL A:477 , NAG A:479 , BMA A:480 , MAN B:482
BINDING SITE FOR RESIDUE MAN B 481
11
BC2
SOFTWARE
FUL A:477 , ASN B:463 , MAN B:481
BINDING SITE FOR RESIDUE MAN B 482
12
BC3
SOFTWARE
BMA A:480 , ASP B:399 , SER B:400 , ASP B:401
BINDING SITE FOR RESIDUE MAN B 483
13
BC4
SOFTWARE
ASN A:234 , TYR A:284 , PRO A:285 , NAG A:472 , NDG A:485
BINDING SITE FOR RESIDUE NAG A 484
14
BC5
SOFTWARE
NAG A:472 , NAG A:484
BINDING SITE FOR RESIDUE NDG A 485
15
BC6
SOFTWARE
GLU B:83 , ASN B:86 , SER B:88 , NAG B:473 , NAG B:487 , NDG B:488
BINDING SITE FOR RESIDUE NAG B 472
16
BC7
SOFTWARE
GLU B:83 , NAG B:472
BINDING SITE FOR RESIDUE NAG B 473
17
BC8
SOFTWARE
ASN B:146 , ASP B:147 , TRP B:437 , ILE B:469 , NAG B:475 , FUC B:477
BINDING SITE FOR RESIDUE NAG B 474
18
BC9
SOFTWARE
NAG B:474 , BMA B:476 , FUC B:477
BINDING SITE FOR RESIDUE NAG B 475
19
CAT
AUTHOR
ARG A:118 , GLU A:119 , ASP A:151 , ARG A:152 , TRP A:178 , ILE A:222 , ARG A:224 , GLU A:276 , ARG A:292 , ARG A:371 , TYR A:406
SUBSTRATE (SIALIC ACID) BINDING RESIDUES IN CATALYTIC SITE
20
CC1
SOFTWARE
NAG B:475
BINDING SITE FOR RESIDUE BMA B 476
21
CC2
SOFTWARE
ASP B:147 , NAG B:474 , NAG B:475
BINDING SITE FOR RESIDUE FUC B 477
22
CC3
SOFTWARE
GLY A:454 , THR A:455 , ASP B:197 , ASN B:200 , NAG B:479
BINDING SITE FOR RESIDUE NAG B 478
23
CC4
SOFTWARE
THR A:455 , NAG B:478 , BMA B:480 , MAN B:484
BINDING SITE FOR RESIDUE NAG B 479
24
CC5
SOFTWARE
NAG B:479 , MAN B:484 , MAN B:486
BINDING SITE FOR RESIDUE BMA B 480
25
CC6
SOFTWARE
NAG B:479 , BMA B:480 , MAN B:485
BINDING SITE FOR RESIDUE MAN B 484
26
CC7
SOFTWARE
MAN B:484
BINDING SITE FOR RESIDUE MAN B 485
27
CC8
SOFTWARE
ASP A:399 , SER A:400 , ASP A:401 , BMA B:480
BINDING SITE FOR RESIDUE MAN B 486
28
CC9
SOFTWARE
ASN B:234 , TYR B:284 , PRO B:285 , NAG B:472 , NDG B:488
BINDING SITE FOR RESIDUE NAG B 487
29
CT2
UNKNOWN
ARG B:118 , GLU B:119 , ASP B:151 , ARG B:152 , TRP B:178 , ILE B:222 , ARG B:224 , GLU B:276 , ARG B:292 , ARG B:371 , TYR B:406
NULL
30
DC1
SOFTWARE
NAG B:472 , NAG B:487
BINDING SITE FOR RESIDUE NDG B 488
31
DC2
SOFTWARE
ASP A:293 , GLY A:297 , ASP A:324 , GLY A:345 , THR A:346 , GLN A:347
BINDING SITE FOR RESIDUE CA A 470
32
DC3
SOFTWARE
ASP B:293 , GLY B:297 , ASP B:324 , GLY B:345 , THR B:346 , GLN B:347
BINDING SITE FOR RESIDUE CA B 470
33
DC4
SOFTWARE
ARG A:118 , ASP A:151 , ARG A:152 , TRP A:178 , ARG A:292 , ARG A:371 , TYR A:406
BINDING SITE FOR RESIDUE ST3 A 471
34
DC5
SOFTWARE
ARG B:118 , ASP B:151 , ARG B:152 , TRP B:178 , ARG B:292 , ARG B:371 , TYR B:406
BINDING SITE FOR RESIDUE ST3 B 471
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1ivea_ (A:)
1b: SCOP_d1iveb_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Sialidases
(238)
Family
:
Sialidases (neuraminidases)
(178)
Protein domain
:
Influenza neuraminidase
(78)
Influenza A virus, different strains [TaxId: 11320]
(61)
1a
d1ivea_
A:
1b
d1iveb_
B:
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1iveA00 (A:82-469)
1b: CATH_1iveB00 (B:82-469)
View:
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Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
6 Propellor
(215)
Topology
:
Neuraminidase
(215)
Homologous Superfamily
:
[code=2.120.10.10, no name defined]
(150)
Influenza a virus (strain a/tokyo/3/1967 h2n2). Organism_taxid: 380960. Strain: a/tokyo/3/1967 h2n2
(5)
1a
1iveA00
A:82-469
1b
1iveB00
B:82-469
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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]
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