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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'PROSITE' information from database.
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Getting 'Exon' information from database.
1ITV
Asym. Unit
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Asym.Unit (73 KB)
Biol.Unit 1 (69 KB)
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(1)
Title
:
DIMERIC FORM OF THE HAEMOPEXIN DOMAIN OF MMP9
Authors
:
H. Cha, E. Kopetzki, R. Huber, M. Lanzendoerfer, H. Brandstetter
Date
:
11 Feb 02 (Deposition) - 04 Sep 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Mmp9, Adaptive Molecular Recognition, Beta Propeller, Dimer, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Cha, E. Kopetzki, R. Huber, M. Lanzendorfer, H. Brandstetter
Structural Basis Of The Adaptive Molecular Recognition By Mmp9.
J. Mol. Biol. V. 320 1065 2002
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
4
Ligand/Ion
SULFATE ION
[
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]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO B:62 , LEU B:63 , ARG B:106 , HOH B:245 , HOH B:286
BINDING SITE FOR RESIDUE SO4 B 196
2
AC2
SOFTWARE
ASN A:7 , ILE A:8 , LYS A:23
BINDING SITE FOR RESIDUE SO4 A 196
3
AC3
SOFTWARE
ASN B:7 , ILE B:8 , LYS B:23
BINDING SITE FOR RESIDUE SO4 B 197
4
AC4
SOFTWARE
ARG A:106 , ARG A:109 , GLY A:117 , ARG A:118 , HOH A:208
BINDING SITE FOR RESIDUE SO4 A 198
[
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_025166 (F59V, chain A/B, )
2: VAR_024595 (P62P, chain A/B, )
3: VAR_014742 (R156Q, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_025166
F
571
V
MMP9_HUMAN
Polymorphism
35691798
A/B
F
59
V
2
UniProt
VAR_024595
R
574
P
MMP9_HUMAN
Polymorphism
2250889
A/B
P
62
P
3
UniProt
VAR_014742
R
668
Q
MMP9_HUMAN
Polymorphism
17577
A/B
R
156
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 10)
Info
All PROSITE Patterns/Profiles
1: HEMOPEXIN_2 (A:6-51,B:6-51|A:52-96,B:52-96|A:98...)
2: HEMOPEXIN (A:44-59,B:44-59)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HEMOPEXIN_2
PS51642
Hemopexin repeat profile.
MMP9_HUMAN
518-563
564-608
610-657
658-704
8
A:6-51
B:6-51
A:52-96
B:52-96
A:98-145
B:98-145
A:146-192
B:146-192
2
HEMOPEXIN
PS00024
Hemopexin domain signature.
MMP9_HUMAN
556-571
2
A:44-59
B:44-59
[
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Exons
(5, 10)
Info
All Exons
Exon 1.9 (A:1-25 | B:1-25)
Exon 1.10 (A:25-72 | B:25-72)
Exon 1.11 (A:72-122 | B:72-122)
Exon 1.12 (A:122-157 | B:122-157)
Exon 1.13 (A:157-195 | B:157-195)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.8/1.9
2: Boundary 1.9/1.10
3: Boundary 1.10/1.11
4: Boundary 1.11/1.12
5: Boundary 1.12/1.13
6: Boundary 1.13/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000372330
1
ENSE00001457585
chr20:
44637547-44637703
157
MMP9_HUMAN
1-46
46
0
-
-
1.2
ENST00000372330
2
ENSE00000662462
chr20:
44638505-44638737
233
MMP9_HUMAN
47-124
78
0
-
-
1.3
ENST00000372330
3
ENSE00000845116
chr20:
44639122-44639270
149
MMP9_HUMAN
124-174
51
0
-
-
1.4
ENST00000372330
4
ENSE00000845117
chr20:
44639561-44639689
129
MMP9_HUMAN
174-217
44
0
-
-
1.5
ENST00000372330
5
ENSE00000845118
chr20:
44639782-44639955
174
MMP9_HUMAN
217-275
59
0
-
-
1.6
ENST00000372330
6
ENSE00000845119
chr20:
44640213-44640386
174
MMP9_HUMAN
275-333
59
0
-
-
1.7
ENST00000372330
7
ENSE00000845120
chr20:
44640776-44640952
177
MMP9_HUMAN
333-392
60
0
-
-
1.8
ENST00000372330
8
ENSE00000845121
chr20:
44641066-44641221
156
MMP9_HUMAN
392-444
53
0
-
-
1.9
ENST00000372330
9
ENSE00000845122
chr20:
44641894-44642173
280
MMP9_HUMAN
444-537
94
2
A:1-25
B:1-25
25
25
1.10
ENST00000372330
10
ENSE00000845123
chr20:
44642296-44642435
140
MMP9_HUMAN
537-584
48
2
A:25-72
B:25-72
48
48
1.11
ENST00000372330
11
ENSE00000845124
chr20:
44642763-44642913
151
MMP9_HUMAN
584-634
51
2
A:72-122
B:72-122
51
51
1.12
ENST00000372330
12
ENSE00000845125
chr20:
44643010-44643113
104
MMP9_HUMAN
634-669
36
2
A:122-157
B:122-157
36
36
1.13
ENST00000372330
13
ENSE00001457551
chr20:
44644889-44645200
312
MMP9_HUMAN
669-707
39
2
A:157-195
B:157-195
39
39
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1itva_ (A:)
1b: SCOP_d1itvb_ (B:)
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Protein Domains
(
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(
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Organisms
(
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(
)
Class
:
All beta proteins
(24004)
Fold
:
4-bladed beta-propeller
(15)
Superfamily
:
Hemopexin-like domain
(15)
Family
:
Hemopexin-like domain
(12)
Protein domain
:
Gelatinase B (MMP-9)
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1itva_
A:
1b
d1itvb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1itvA00 (A:1-195)
1b: CATH_1itvB00 (B:1-195)
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(
)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
4 Propellor
(14)
Topology
:
Hemopexin
(14)
Homologous Superfamily
:
Hemopexin
(14)
Human (Homo sapiens)
(10)
1a
1itvA00
A:1-195
1b
1itvB00
B:1-195
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
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Atom Selection
(currently selected atoms:
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Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
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