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Getting 'Exon' information from database.
1ITQ
Asym. Unit
Info
Asym.Unit (128 KB)
Biol.Unit 1 (123 KB)
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(1)
Title
:
HUMAN RENAL DIPEPTIDASE
Authors
:
Y. Nitanai, Y. Satow, H. Adachi, M. Tsujimoto
Date
:
02 Feb 02 (Deposition) - 28 Aug 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Dipeptidase, Glycoprotein, Membrane-Bound, Zinc Protease Beta- Lactamase, Cilastatin, Complex (Hydrolase-Inhibitor), Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Nitanai, Y. Satow, H. Adachi, M. Tsujimoto
Crystal Structure Of Human Renal Dipeptidase Involved In Beta-Lactam Hydrolysis
J. Mol. Biol. V. 321 177 2002
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 8)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
1c: N-ACETYL-D-GLUCOSAMINE (NAGc)
1d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
2
ZN
4
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:41 , THR A:43 , THR A:44
BINDING SITE FOR RESIDUE NAG A 461
2
AC2
SOFTWARE
ASN B:41 , THR B:43 , THR B:44 , TYR B:96
BINDING SITE FOR RESIDUE NAG B 462
3
AC3
SOFTWARE
ASN A:316 , ASP B:1
BINDING SITE FOR RESIDUE NAG A 463
4
AC4
SOFTWARE
PHE A:2 , GLU A:6 , ASN B:316 , THR B:318
BINDING SITE FOR RESIDUE NAG B 464
5
AC5
SOFTWARE
HIS A:20 , ASP A:22 , GLU A:125 , ZN A:402 , HOH A:421 , HOH A:422
BINDING SITE FOR RESIDUE ZN A 401
6
AC6
SOFTWARE
GLU A:125 , HIS A:198 , HIS A:219 , ZN A:401 , HOH A:422 , HOH A:423
BINDING SITE FOR RESIDUE ZN A 402
7
AC7
SOFTWARE
HIS B:20 , ASP B:22 , GLU B:125 , ZN B:412 , HOH B:431 , HOH B:432
BINDING SITE FOR RESIDUE ZN B 411
8
AC8
SOFTWARE
GLU B:125 , HIS B:198 , HIS B:219 , ZN B:411 , HOH B:432 , HOH B:433
BINDING SITE FOR RESIDUE ZN B 412
[
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]
SAPs(SNPs)/Variants
(4, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_036496 (R230H, chain A/B, )
2: VAR_DPEP1_HUMAN_CCDS10982_1_01 (R230H, chain A/B, )
3: VAR_061375 (E335K, chain A/B, )
4: VAR_061376 (E335Q, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_036496
R
246
H
DPEP1_HUMAN
Unclassified
---
A/B
R
230
H
2
CancerSNP
VAR_DPEP1_HUMAN_CCDS10982_1_01
*
R
246
H
DPEP1_HUMAN
Disease (Colorectal cancer)
---
A/B
R
230
H
3
UniProt
VAR_061375
E
351
K
DPEP1_HUMAN
Polymorphism
1126464
A/B
E
335
K
4
UniProt
VAR_061376
E
351
Q
DPEP1_HUMAN
Polymorphism
1126464
A/B
E
335
Q
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: RENAL_DIPEPTIDASE_2 (A:1-369,B:1-369)
2: RENAL_DIPEPTIDASE_1 (A:124-146,B:124-146)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RENAL_DIPEPTIDASE_2
PS51365
Renal dipeptidase family profile.
DPEP1_HUMAN
17-385
2
A:1-369
B:1-369
2
RENAL_DIPEPTIDASE_1
PS00869
Renal dipeptidase active site.
DPEP1_HUMAN
140-162
2
A:124-146
B:124-146
[
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]
Exons
(10, 20)
Info
All Exons
Exon 1.3b (A:1-19 | B:1-19)
Exon 1.4 (A:19-63 | B:19-63)
Exon 1.5 (A:64-108 | B:64-108)
Exon 1.6 (A:108-158 | B:108-158)
Exon 1.7 (A:158-181 | B:158-181)
Exon 1.8 (A:182-240 | B:182-240)
Exon 1.9 (A:241-269 | B:241-269)
Exon 1.10 (A:269-294 | B:269-294)
Exon 1.11 (A:294-339 | B:294-339)
Exon 1.12a (A:340-369 | B:340-369)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.2/1.3b
02: Boundary 1.3b/1.4
03: Boundary 1.4/1.5
04: Boundary 1.5/1.6
05: Boundary 1.6/1.7
06: Boundary 1.7/1.8
07: Boundary 1.8/1.9
08: Boundary 1.9/1.10
09: Boundary 1.10/1.11
10: Boundary 1.11/1.12a
11: Boundary 1.12a/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2
ENST00000393092
2
ENSE00001514166
chr16:
89687000-89687184
185
DPEP1_HUMAN
-
0
0
-
-
1.3b
ENST00000393092
3b
ENSE00000946266
chr16:
89696713-89696922
210
DPEP1_HUMAN
1-35
35
2
A:1-19
B:1-19
19
19
1.4
ENST00000393092
4
ENSE00001312895
chr16:
89702316-89702448
133
DPEP1_HUMAN
35-79
45
2
A:19-63
B:19-63
45
45
1.5
ENST00000393092
5
ENSE00001290840
chr16:
89702672-89702804
133
DPEP1_HUMAN
80-124
45
2
A:64-108
B:64-108
45
45
1.6
ENST00000393092
6
ENSE00001314206
chr16:
89702941-89703091
151
DPEP1_HUMAN
124-174
51
2
A:108-158
B:108-158
51
51
1.7
ENST00000393092
7
ENSE00001292209
chr16:
89703274-89703343
70
DPEP1_HUMAN
174-197
24
2
A:158-181
B:158-181
24
24
1.8
ENST00000393092
8
ENSE00001325387
chr16:
89703612-89703788
177
DPEP1_HUMAN
198-256
59
2
A:182-240
B:182-240
59
59
1.9
ENST00000393092
9
ENSE00001292673
chr16:
89703876-89703960
85
DPEP1_HUMAN
257-285
29
2
A:241-269
B:241-269
29
29
1.10
ENST00000393092
10
ENSE00001305962
chr16:
89704040-89704115
76
DPEP1_HUMAN
285-310
26
2
A:269-294
B:269-294
26
26
1.11
ENST00000393092
11
ENSE00001314382
chr16:
89704244-89704379
136
DPEP1_HUMAN
310-355
46
2
A:294-339
B:294-339
46
46
1.12a
ENST00000393092
12a
ENSE00001307235
chr16:
89704460-89704838
379
DPEP1_HUMAN
356-411
56
2
A:340-369
B:340-369
30
30
[
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]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1itqa_ (A:)
1b: SCOP_d1itqb_ (B:)
View:
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Folds
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(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Metallo-dependent hydrolases
(273)
Family
:
Renal dipeptidase
(2)
Protein domain
:
Renal dipeptidase
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1itqa_
A:
1b
d1itqb_
B:
[
close SCOP info
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1itqA00 (A:1-369)
1b: CATH_1itqB00 (B:1-369)
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Homologous Superfamilies
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Metal-dependent hydrolases
(190)
Human (Homo sapiens)
(5)
1a
1itqA00
A:1-369
1b
1itqB00
B:1-369
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
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Sorry, no Info available
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(currently selected atoms:
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Protein & NOT Variant
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Protein & NOT PROSITE
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Asymmetric Unit 1
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