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1ISX
Asym. Unit
Info
Asym.Unit (159 KB)
Biol.Unit 1 (154 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF XYLANASE FROM STREPTOMYCES OLIVACEOVIRIDIS E-86 COMPLEXED WITH XYLOTRIOSE
Authors
:
Z. Fujimoto, A. Kuno, S. Kaneko, H. Kobayashi, I. Kusakabe, H. Mizuno
Date
:
27 Dec 01 (Deposition) - 20 Feb 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Alpha-Beta Barrel, Protein-Sugar Complex, Carbohydrate Binding Domain, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. Fujimoto, A. Kuno, S. Kaneko, H. Kobayashi, I. Kusakabe, H. Mizuno
Crystal Structures Of The Sugar Complexes Of Streptomyces Olivaceoviridis E-86 Xylanase: Sugar Binding Structure Of The Family 13 Carbohydrate Binding Module.
J. Mol. Biol. V. 316 65 2002
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 17)
Info
All Hetero Components
1a: BETA-D-XYLOPYRANOSE (XYPa)
1b: BETA-D-XYLOPYRANOSE (XYPb)
1c: BETA-D-XYLOPYRANOSE (XYPc)
1d: BETA-D-XYLOPYRANOSE (XYPd)
1e: BETA-D-XYLOPYRANOSE (XYPe)
1f: BETA-D-XYLOPYRANOSE (XYPf)
1g: BETA-D-XYLOPYRANOSE (XYPg)
1h: BETA-D-XYLOPYRANOSE (XYPh)
1i: BETA-D-XYLOPYRANOSE (XYPi)
1j: BETA-D-XYLOPYRANOSE (XYPj)
1k: BETA-D-XYLOPYRANOSE (XYPk)
1l: BETA-D-XYLOPYRANOSE (XYPl)
1m: BETA-D-XYLOPYRANOSE (XYPm)
1n: BETA-D-XYLOPYRANOSE (XYPn)
1o: BETA-D-XYLOPYRANOSE (XYPo)
1p: BETA-D-XYLOPYRANOSE (XYPp)
1q: BETA-D-XYLOPYRANOSE (XYPq)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
XYP
17
Ligand/Ion
BETA-D-XYLOPYRANOSE
[
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]
Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:45 , ASN A:373 , TYR A:423 , XYP A:451 , HOH A:1848
BINDING SITE FOR RESIDUE XYP A 450
02
AC2
SOFTWARE
GLU A:44 , ASN A:45 , LYS A:48 , GLN A:88 , TRP A:266 , XYP A:450 , XYP A:452 , HOH A:1634 , HOH A:1785
BINDING SITE FOR RESIDUE XYP A 451
03
AC3
SOFTWARE
LYS A:48 , HIS A:81 , TRP A:85 , ASN A:127 , GLU A:128 , GLN A:205 , GLU A:236 , TRP A:266 , TRP A:274 , XYP A:451 , XYP A:456
BINDING SITE FOR RESIDUE XYP A 452
04
AC4
SOFTWARE
GLU A:128 , TYR A:172 , XYP A:452 , XYP A:457
BINDING SITE FOR RESIDUE XYP A 456
05
AC5
SOFTWARE
ASN A:173 , ASN A:209 , SER A:212 , ARG A:275 , XYP A:456
BINDING SITE FOR RESIDUE XYP A 457
06
AC6
SOFTWARE
ASP A:325 , VAL A:326 , PRO A:327 , ASN A:328 , GLN A:338 , TYR A:340 , HIS A:343 , ASN A:347 , HOH A:1733
BINDING SITE FOR RESIDUE XYP A 1461
07
AC7
SOFTWARE
ASP A:408 , ALA A:409 , VAL A:410 , GLY A:411 , GLY A:412 , GLN A:421 , TYR A:423 , ASN A:430 , XYP A:472 , HOH A:1552 , HOH A:1621 , HOH A:1705
BINDING SITE FOR RESIDUE XYP A 471
08
AC8
SOFTWARE
LYS A:24 , TYR A:423 , SER A:426 , XYP A:471 , HOH A:1705
BINDING SITE FOR RESIDUE XYP A 472
09
AC9
SOFTWARE
ASN B:545 , GLN B:588 , XYP B:951
BINDING SITE FOR RESIDUE XYP B 950
10
BC1
SOFTWARE
GLU B:544 , ASN B:545 , LYS B:548 , GLN B:588 , TRP B:766 , TRP B:774 , XYP B:950 , XYP B:952 , HOH B:1035
BINDING SITE FOR RESIDUE XYP B 951
11
BC2
SOFTWARE
LYS B:548 , HIS B:581 , TRP B:585 , ASN B:627 , GLU B:628 , GLN B:705 , HIS B:707 , GLU B:736 , TRP B:766 , TRP B:774 , XYP B:951 , XYP B:956
BINDING SITE FOR RESIDUE XYP B 952
12
BC3
SOFTWARE
GLU B:628 , TYR B:672 , GLN B:705 , TRP B:774 , XYP B:952 , XYP B:957 , HOH B:1084 , HOH B:1104 , HOH B:1157 , HOH B:1312
BINDING SITE FOR RESIDUE XYP B 956
13
BC4
SOFTWARE
TYR B:672 , ASN B:673 , ASN B:709 , SER B:712 , ARG B:775 , XYP B:956 , XYP B:958 , HOH B:1093 , HOH B:1292
BINDING SITE FOR RESIDUE XYP B 957
14
BC5
SOFTWARE
GLN A:55 , ASN B:673 , GLY B:711 , SER B:712 , XYP B:957 , HOH B:1255
BINDING SITE FOR RESIDUE XYP B 958
15
BC6
SOFTWARE
ASP B:825 , VAL B:826 , PRO B:827 , ASN B:828 , GLN B:838 , TYR B:840 , HIS B:843 , ASN B:847
BINDING SITE FOR RESIDUE XYP B 961
16
BC7
SOFTWARE
VAL B:910 , GLY B:911 , XYP B:971 , HOH B:1376
BINDING SITE FOR RESIDUE XYP B 970
17
BC8
SOFTWARE
ASP B:908 , ALA B:909 , VAL B:910 , GLY B:911 , GLY B:912 , GLN B:921 , TYR B:923 , ASN B:930 , XYP B:970
BINDING SITE FOR RESIDUE XYP B 971
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1isxa1 (A:304-436)
1b: SCOP_d1isxb1 (B:804-936)
2a: SCOP_d1isxa2 (A:1-303)
2b: SCOP_d1isxb2 (B:501-803)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
beta-Trefoil
(385)
Superfamily
:
Ricin B-like lectins
(91)
Family
:
Ricin B-like
(65)
Protein domain
:
Xylan binding domain, CBM13 (Endo-1,4-beta-xylanase C-terminal domain)
(14)
Streptomyces olivaceoviridis [TaxId: 1921]
(11)
1a
d1isxa1
A:304-436
1b
d1isxb1
B:804-936
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
beta-glycanases
(284)
Protein domain
:
Xylanase A, catalytic core
(61)
Streptomyces olivaceoviridis [TaxId: 1921]
(12)
2a
d1isxa2
A:1-303
2b
d1isxb2
B:501-803
[
close SCOP info
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1isxA02 (A:1-300)
1b: CATH_1isxB02 (B:501-800)
2a: CATH_1isxA01 (A:313-434)
2b: CATH_1isxB01 (B:813-934)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Streptomyces olivaceoviridis. Organism_taxid: 1921. Strain: e-86.
(13)
1a
1isxA02
A:1-300
1b
1isxB02
B:501-800
Class
:
Mainly Beta
(13760)
Architecture
:
Trefoil
(289)
Topology
:
Trefoil (Acidic Fibroblast Growth Factor, subunit A)
(289)
Homologous Superfamily
:
[code=2.80.10.50, no name defined]
(289)
Streptomyces olivaceoviridis. Organism_taxid: 1921. Strain: e-86.
(11)
2a
1isxA01
A:313-434
2b
1isxB01
B:813-934
[
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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