PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1ISG
Asym. Unit
Info
Asym.Unit (92 KB)
Biol.Unit 1 (87 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE ANALYSIS OF BST-1/CD157 WITH ATPGAMMAS
Authors
:
S. Yamamoto-Katayama, M. Ariyoshi, K. Ishihara, T. Hirano, H. Jingami K. Morikawa
Date
:
05 Dec 01 (Deposition) - 13 Mar 02 (Release) - 15 Feb 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Adp Ribosylcyclase, Nad Glycohydrolase, Cns, Atpgammas, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Yamamoto-Katayama, M. Ariyoshi, K. Ishihara, T. Hirano, H. Jingami, K. Morikawa
Crystallographic Studies On Human Bst-1/Cd157 With Adp-Ribosyl Cyclase And Nad Glycohydrolase Activities.
J. Mol. Biol. V. 316 711 2002
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 6)
Info
All Hetero Components
1a: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSa)
1b: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSb)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AGS
2
Ligand/Ion
PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
2
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:79 , SER A:80 , LEU A:83 , ASN A:160 , SER A:162 , GLU A:163 , GLU A:197 , NAG A:267
BINDING SITE FOR RESIDUE NAG A 266
2
AC2
SOFTWARE
PRO A:201 , NAG A:266
BINDING SITE FOR RESIDUE NAG A 267
3
AC3
SOFTWARE
ASN B:79 , SER B:80 , LEU B:83 , ASN B:160 , SER B:162 , GLU B:163 , PRO B:164 , GLU B:197 , NAG B:267
BINDING SITE FOR RESIDUE NAG B 266
4
AC4
SOFTWARE
NAG B:266
BINDING SITE FOR RESIDUE NAG B 267
5
AC5
SOFTWARE
TRP B:77 , ASN B:79 , SER B:80 , HIS B:81 , LEU B:97 , ASP B:107 , PHE B:108 , ASP B:137 , TRP B:140 , PHE B:173 , HOH B:1039 , HOH B:1041 , HOH B:1042
BINDING SITE FOR RESIDUE AGS B 1001
6
AC6
SOFTWARE
TRP A:77 , ASN A:79 , SER A:80 , HIS A:81 , LEU A:97 , ASP A:107 , PHE A:108 , ASP A:137 , TRP A:140 , PHE A:173 , HOH A:1038 , HOH A:1047 , HOH A:1048
BINDING SITE FOR RESIDUE AGS A 1002
[
close Site info
]
SAPs(SNPs)/Variants
(4, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_028438 (A45V, chain A/B, )
2: VAR_028439 (I69V, chain A/B, )
3: VAR_021964 (R93H, chain A/B, )
4: VAR_021965 (R113Q, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_028438
A
77
V
BST1_HUMAN
Polymorphism
2302466
A/B
A
45
V
2
UniProt
VAR_028439
I
101
V
BST1_HUMAN
Polymorphism
6840615
A/B
I
69
V
3
UniProt
VAR_021964
R
125
H
BST1_HUMAN
Polymorphism
2302465
A/B
R
93
H
4
UniProt
VAR_021965
R
145
Q
BST1_HUMAN
Polymorphism
2302464
A/B
R
113
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(8, 16)
Info
All Exons
Exon 1.1a (A:2-31 | B:2-31)
Exon 1.3 (A:31-73 | B:31-73)
Exon 1.4b (A:74-119 | B:74-119)
Exon 1.5b (A:119-146 | B:119-146)
Exon 1.6a (A:147-172 | B:147-172)
Exon 1.7 (A:172-203 | B:172-203)
Exon 1.8 (A:203-232 | B:203-232)
Exon 1.9 (A:232-251 | B:232-251)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.3
3: Boundary 1.3/1.4b
4: Boundary 1.4b/1.5b
5: Boundary 1.5b/1.6a
6: Boundary 1.6a/1.7
7: Boundary 1.7/1.8
8: Boundary 1.8/1.9
9: Boundary 1.9/1.11a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000265016
1a
ENSE00000799219
chr4:
15704573-15704955
383
BST1_HUMAN
1-63
63
2
A:2-31
B:2-31
30
30
1.3
ENST00000265016
3
ENSE00000705579
chr4:
15707138-15707264
127
BST1_HUMAN
63-105
43
2
A:31-73
B:31-73
43
43
1.4b
ENST00000265016
4b
ENSE00000705573
chr4:
15709134-15709269
136
BST1_HUMAN
106-151
46
2
A:74-119
B:74-119
46
46
1.5b
ENST00000265016
5b
ENSE00000705567
chr4:
15713430-15713512
83
BST1_HUMAN
151-178
28
2
A:119-146
B:119-146
28
28
1.6a
ENST00000265016
6a
ENSE00000705562
chr4:
15716908-15716984
77
BST1_HUMAN
179-204
26
2
A:147-172
B:147-172
26
26
1.7
ENST00000265016
7
ENSE00000705557
chr4:
15717330-15717422
93
BST1_HUMAN
204-235
32
2
A:172-203
B:172-203
32
32
1.8
ENST00000265016
8
ENSE00000705552
chr4:
15720530-15720616
87
BST1_HUMAN
235-264
30
2
A:203-232
B:203-232
30
30
1.9
ENST00000265016
9
ENSE00000705457
chr4:
15724498-15724557
60
BST1_HUMAN
264-284
21
2
A:232-251
B:232-251
20
20
1.11a
ENST00000265016
11a
ENSE00001221392
chr4:
15733363-15733796
434
BST1_HUMAN
284-318
35
0
-
-
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1isga_ (A:)
1b: SCOP_d1isgb_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
N-(deoxy)ribosyltransferase-like
(76)
Family
:
ADP ribosyl cyclase-like
(60)
Protein domain
:
Bone marror stromal cell antigen 1, BST-1/CD157 (ADP ribosyl cyclase-2)
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d1isga_
A:
1b
d1isgb_
B:
[
close SCOP info
]
CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1isgA02 (A:69-95,A:151-251)
1b: CATH_1isgB02 (B:69-95,B:151-251)
2a: CATH_1isgA01 (A:2-68,A:96-150)
2b: CATH_1isgB01 (B:2-68,B:96-150)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Human (Homo sapiens)
(188)
1a
1isgA02
A:69-95,A:151-251
1b
1isgB02
B:69-95,B:151-251
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
ADP Ribosyl Cyclase; Chain A, domain 1
(29)
Homologous Superfamily
:
ADP Ribosyl Cyclase; Chain A, domain 1
(29)
Human (Homo sapiens)
(20)
2a
1isgA01
A:2-68,A:96-150
2b
1isgB01
B:2-68,B:96-150
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (92 KB)
Header - Asym.Unit
Biol.Unit 1 (87 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1ISG
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
