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1IRM
Asym. Unit
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Asym.Unit (105 KB)
Biol.Unit 1 (35 KB)
Biol.Unit 2 (34 KB)
Biol.Unit 3 (34 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF APO HEME OXYGENASE-1
Authors
:
M. Sugishima, H. Sakamoto, Y. Kakuta, Y. Omata, S. Hayashi, M. Noguchi, K. Fukuyama
Date
:
09 Oct 01 (Deposition) - 10 Jul 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.55
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: C (1x)
Biol. Unit 2: A (1x)
Biol. Unit 3: B (1x)
Keywords
:
Disordered Alpha Helix, Apo Form Of Hemoprotein, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Sugishima, H. Sakamoto, Y. Kakuta, Y. Omata, S. Hayashi, M. Noguchi, K. Fukuyama
Crystal Structure Of Rat Apo-Heme Oxygenase-1 (Ho-1): Mechanism Of Heme Binding In Ho-1 Inferred From Structural Comparison Of The Apo And Heme Complex Forms
Biochemistry V. 41 7293 2002
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: HEME_OXYGENASE (A:129-139,B:129-139,C:129-139)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HEME_OXYGENASE
PS00593
Heme oxygenase signature.
HMOX1_RAT
129-139
3
A:129-139
B:129-139
C:129-139
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Exons
(3, 9)
Info
All Exons
Exon 1.2 (A:31-48 | B:30-48 | C:30-48)
Exon 1.3b (A:49-212 | B:49-212 (gaps) | C:49-...)
Exon 1.4 (A:213-222 | B:213-223 | C:213-225)
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1: Boundary 1.1/1.2
2: Boundary 1.2/1.3b
3: Boundary 1.3b/1.4
4: Boundary 1.4/1.5a
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000019192
1
ENSRNOE00000437660
chr19:
13963139-13963277
139
HMOX1_RAT
1-8
8
0
-
-
1.2
ENSRNOT00000019192
2
ENSRNOE00000433615
chr19:
13965179-13965299
121
HMOX1_RAT
8-48
41
3
A:31-48
B:30-48
C:30-48
18
19
19
1.3b
ENSRNOT00000019192
3b
ENSRNOE00000135098
chr19:
13966126-13966617
492
HMOX1_RAT
49-212
164
3
A:49-212
B:49-212 (gaps)
C:49-212
164
164
164
1.4
ENSRNOT00000019192
4
ENSRNOE00000135373
chr19:
13968127-13968226
100
HMOX1_RAT
213-246
34
3
A:213-222
B:213-223
C:213-225
10
11
13
1.5a
ENSRNOT00000019192
5a
ENSRNOE00000265745
chr19:
13969266-13969955
690
HMOX1_RAT
246-289
44
0
-
-
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SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1irma_ (A:)
1b: SCOP_d1irmb_ (B:)
1c: SCOP_d1irmc_ (C:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Heme oxygenase-like
(107)
Superfamily
:
Heme oxygenase-like
(107)
Family
:
Eukaryotic type heme oxygenase
(69)
Protein domain
:
Heme oxygenase-1 (HO-1)
(49)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(25)
1a
d1irma_
A:
1b
d1irmb_
B:
1c
d1irmc_
C:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1irmC00 (C:30-225)
1b: CATH_1irmA00 (A:31-222)
1c: CATH_1irmB00 (B:30-223)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Heme Oxygenase; Chain A
(84)
Homologous Superfamily
:
Heme Oxygenase; Chain A
(84)
Norway rat (Rattus norvegicus)
(13)
1a
1irmC00
C:30-225
1b
1irmA00
A:31-222
1c
1irmB00
B:30-223
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Pfam Domains
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Asym.Unit (105 KB)
Header - Asym.Unit
Biol.Unit 1 (35 KB)
Header - Biol.Unit 1
Biol.Unit 2 (34 KB)
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Biol.Unit 3 (34 KB)
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