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1IR3
Asym. Unit
Info
Asym.Unit (60 KB)
Biol.Unit 1 (108 KB)
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(1)
Title
:
PHOSPHORYLATED INSULIN RECEPTOR TYROSINE KINASE IN COMPLEX WITH PEPTIDE SUBSTRATE AND ATP ANALOG
Authors
:
S. R. Hubbard
Date
:
22 Sep 97 (Deposition) - 07 Jan 98 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Tyrosine Kinase, Signal Transduction, Phosphotransferase, Complex (Kinase/Peptide Substrate/Atp Analog), Enzyme, Complex (Transferase/Substrate)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. R. Hubbard
Crystal Structure Of The Activated Insulin Receptor Tyrosine Kinase In Complex With Peptide Substrate And Atp Analog.
Embo J. V. 16 5572 1997
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPa)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
3a: O-PHOSPHOTYROSINE (PTRa)
3b: O-PHOSPHOTYROSINE (PTRb)
3c: O-PHOSPHOTYROSINE (PTRc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ANP
1
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2
MG
2
Ligand/Ion
MAGNESIUM ION
3
PTR
3
Mod. Amino Acid
O-PHOSPHOTYROSINE
[
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]
Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:32 , HOH A:52 , ANP A:300 , MG A:302 , ASN A:1137 , ASP A:1150
BINDING SITE FOR RESIDUE MG A 301
2
AC2
SOFTWARE
HOH A:82 , HOH A:95 , HOH A:158 , HOH A:170 , ANP A:300 , MG A:301 , ASP A:1150
BINDING SITE FOR RESIDUE MG A 302
3
AC3
SOFTWARE
HOH A:32 , HOH A:52 , HOH A:61 , HOH A:74 , HOH A:75 , HOH A:76 , HOH A:82 , HOH A:103 , HOH A:132 , HOH A:158 , MG A:301 , MG A:302 , LEU A:1002 , GLY A:1005 , SER A:1006 , VAL A:1010 , ALA A:1028 , LYS A:1030 , MET A:1076 , GLU A:1077 , MET A:1079 , ASP A:1083 , ARG A:1136 , ASN A:1137 , ASP A:1150
BINDING SITE FOR RESIDUE ANP A 300
[
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]
SAPs(SNPs)/Variants
(24, 24)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_004091 (V985M, chain A, )
02: VAR_004092 (R993Q, chain A, )
03: VAR_015922 (I996F, chain A, )
04: VAR_004093 (G1008V, chain A, )
05: VAR_015923 (A1028V, chain A, )
06: VAR_041432 (L1038V, chain A, )
07: VAR_004094 (A1048D, chain A, )
08: VAR_015924 (K1068E, chain A, )
09: VAR_015925 (R1092W, chain A, )
10: VAR_015926 (I1116T, chain A, )
11: VAR_015927 (R1131Q, chain A, )
12: VAR_015928 (R1131W, chain A, )
13: VAR_004095 (A1134T, chain A, )
14: VAR_004096 (A1135E, chain A, )
15: VAR_004097 (M1153I, chain A, )
16: VAR_004098 (R1164Q, chain A, )
17: VAR_015929 (R1174Q, chain A, )
18: VAR_015930 (R1174W, chain A, )
19: VAR_004099 (P1178L, chain A, )
20: VAR_015931 (E1179D, chain A, )
21: VAR_015932 (E1179K, chain A, )
22: VAR_004100 (W1193L, chain A, )
23: VAR_004101 (W1200S, chain A, )
24: VAR_041433 (T1255A, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_004091
V
1012
M
INSR_HUMAN
Polymorphism
1799816
A
V
985
M
02
UniProt
VAR_004092
R
1020
Q
INSR_HUMAN
Disease (IRAN type A)
---
A
R
993
Q
03
UniProt
VAR_015922
I
1023
F
INSR_HUMAN
Polymorphism
---
A
I
996
F
04
UniProt
VAR_004093
G
1035
V
INSR_HUMAN
Disease (IRAN type A)
---
A
G
1008
V
05
UniProt
VAR_015923
A
1055
V
INSR_HUMAN
Disease (IRAN type A)
---
A
A
1028
V
06
UniProt
VAR_041432
L
1065
V
INSR_HUMAN
Polymorphism
56395521
A
L
1038
V
07
UniProt
VAR_004094
A
1075
D
INSR_HUMAN
Disease (IRAN type A)
---
A
A
1048
D
08
UniProt
VAR_015924
K
1095
E
INSR_HUMAN
Unclassified
---
A
K
1068
E
09
UniProt
VAR_015925
R
1119
W
INSR_HUMAN
Disease (LEPRCH)
---
A
R
1092
W
10
UniProt
VAR_015926
I
1143
T
INSR_HUMAN
Disease (RMS)
---
A
I
1116
T
11
UniProt
VAR_015927
R
1158
Q
INSR_HUMAN
Disease (NIDDM)
---
A
R
1131
Q
12
UniProt
VAR_015928
R
1158
W
INSR_HUMAN
Disease (RMS)
---
A
R
1131
W
13
UniProt
VAR_004095
A
1161
T
INSR_HUMAN
Disease (IRAN type A)
28933084
A
A
1134
T
14
UniProt
VAR_004096
A
1162
E
INSR_HUMAN
Disease (IRAN type A)
---
A
A
1135
E
15
UniProt
VAR_004097
M
1180
I
INSR_HUMAN
Unclassified
---
A
M
1153
I
16
UniProt
VAR_004098
R
1191
Q
INSR_HUMAN
Disease (NIDDM)
---
A
R
1164
Q
17
UniProt
VAR_015929
R
1201
Q
INSR_HUMAN
Disease (IRAN type A)
28933086
A
R
1174
Q
18
UniProt
VAR_015930
R
1201
W
INSR_HUMAN
Disease (RMS)
---
A
R
1174
W
19
UniProt
VAR_004099
P
1205
L
INSR_HUMAN
Disease (IRAN type A)
---
A
P
1178
L
20
UniProt
VAR_015931
E
1206
D
INSR_HUMAN
Disease (IRAN type A)
---
A
E
1179
D
21
UniProt
VAR_015932
E
1206
K
INSR_HUMAN
Disease (LEPRCH)
---
A
E
1179
K
22
UniProt
VAR_004100
W
1220
L
INSR_HUMAN
Disease (IRAN type A)
52800171
A
W
1193
L
23
UniProt
VAR_004101
W
1227
S
INSR_HUMAN
Disease (IRAN type A)
---
A
W
1200
S
24
UniProt
VAR_041433
T
1282
A
INSR_HUMAN
Polymorphism
55875349
A
T
1255
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:1002-1030)
2: PROTEIN_KINASE_TYR (A:1128-1140)
3: RECEPTOR_TYR_KIN_II (A:1156-1164)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
INSR_HUMAN
1029-1057
1
A:1002-1030
2
PROTEIN_KINASE_TYR
PS00109
Tyrosine protein kinases specific active-site signature.
INSR_HUMAN
1155-1167
1
A:1128-1140
3
RECEPTOR_TYR_KIN_II
PS00239
Receptor tyrosine kinase class II signature.
INSR_HUMAN
1183-1191
1
A:1156-1164
[
close PROSITE info
]
Exons
(6, 6)
Info
All Exons
Exon 1.17 (A:981-1059)
Exon 1.18 (A:1060-1096)
Exon 1.19 (A:1097-1150)
Exon 1.20 (A:1150-1193)
Exon 1.21 (A:1193-1238)
Exon 1.22 (A:1238-1283)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.16/1.17
2: Boundary 1.17/1.18
3: Boundary 1.18/1.19
4: Boundary 1.19/1.20
5: Boundary 1.20/1.21
6: Boundary 1.21/1.22
7: Boundary 1.22/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000302850
1
ENSE00001283493
chr19:
7294011-7293803
209
INSR_HUMAN
1-34
34
0
-
-
1.2
ENST00000302850
2
ENSE00001157643
chr19:
7267907-7267356
552
INSR_HUMAN
34-218
185
0
-
-
1.3
ENST00000302850
3
ENSE00001157630
chr19:
7184648-7184327
322
INSR_HUMAN
218-325
108
0
-
-
1.4
ENST00000302850
4
ENSE00001157622
chr19:
7174742-7174594
149
INSR_HUMAN
325-375
51
0
-
-
1.5
ENST00000302850
5
ENSE00001157620
chr19:
7172445-7172301
145
INSR_HUMAN
375-423
49
0
-
-
1.6
ENST00000302850
6
ENSE00001157613
chr19:
7170762-7170548
215
INSR_HUMAN
423-495
73
0
-
-
1.7
ENST00000302850
7
ENSE00001157603
chr19:
7168105-7167979
127
INSR_HUMAN
495-537
43
0
-
-
1.8
ENST00000302850
8
ENSE00001157594
chr19:
7166415-7166165
251
INSR_HUMAN
537-621
85
0
-
-
1.9
ENST00000302850
9
ENSE00001157586
chr19:
7163210-7163043
168
INSR_HUMAN
621-677
57
0
-
-
1.10
ENST00000302850
10
ENSE00001157582
chr19:
7152938-7152737
202
INSR_HUMAN
677-744
68
0
-
-
1.11
ENST00000302850
11
ENSE00001157509
chr19:
7150543-7150508
36
INSR_HUMAN
744-756
13
0
-
-
1.12
ENST00000302850
12
ENSE00001157577
chr19:
7143101-7142827
275
INSR_HUMAN
756-848
93
0
-
-
1.13
ENST00000302850
13
ENSE00001157569
chr19:
7141827-7141688
140
INSR_HUMAN
848-894
47
0
-
-
1.14
ENST00000302850
14
ENSE00001157563
chr19:
7132328-7132169
160
INSR_HUMAN
895-948
54
0
-
-
1.15
ENST00000302850
15
ENSE00001157555
chr19:
7128965-7128863
103
INSR_HUMAN
948-982
35
0
-
-
1.16
ENST00000302850
16
ENSE00001157546
chr19:
7126662-7126595
68
INSR_HUMAN
982-1005
24
0
-
-
1.17
ENST00000302850
17
ENSE00001157539
chr19:
7125538-7125294
245
INSR_HUMAN
1005-1086
82
1
A:981-1059
79
1.18
ENST00000302850
18
ENSE00001157531
chr19:
7123000-7122890
111
INSR_HUMAN
1087-1123
37
1
A:1060-1096
37
1.19
ENST00000302850
19
ENSE00001157526
chr19:
7122784-7122625
160
INSR_HUMAN
1124-1177
54
1
A:1097-1150
54
1.20
ENST00000302850
20
ENSE00001686057
chr19:
7120760-7120631
130
INSR_HUMAN
1177-1220
44
1
A:1150-1193
44
1.21
ENST00000302850
21
ENSE00001157513
chr19:
7119594-7119460
135
INSR_HUMAN
1220-1265
46
1
A:1193-1238
46
1.22
ENST00000302850
22
ENSE00001383357
chr19:
7117421-7112266
5156
INSR_HUMAN
1265-1382
118
1
A:1238-1283
46
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1ir3a_ (A:)
View:
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(
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(
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Folds
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
Insulin receptor
(16)
Human (Homo sapiens) [TaxId: 9606]
(16)
1a
d1ir3a_
A:
[
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1ir3A01 (A:984-1078)
2a: CATH_1ir3A02 (A:1079-1281)
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Classes
(
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Topologies
(
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(
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Human (Homo sapiens)
(1036)
1a
1ir3A01
A:984-1078
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Human (Homo sapiens)
(1049)
2a
1ir3A02
A:1079-1281
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
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