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1IQD
Biol. Unit 1
Info
Asym.Unit (103 KB)
Biol.Unit 1 (99 KB)
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(1)
Title
:
HUMAN FACTOR VIII C2 DOMAIN COMPLEXED TO HUMAN MONOCLONAL BO2C11 FAB.
Authors
:
P. C. Spiegel Jr. , M. Jacquemin, J. M. Saint-Remy, B. L. Stoddard, K. P. Pratt
Date
:
21 Jul 01 (Deposition) - 15 Aug 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Factor Viii, C2 Domain, Antibody, Blood Coagulation, Inhibitor, Bo2C11, Immune System/Blood Clotting Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. C. Spiegel Jr. , M. Jacquemin, J. M. Saint-Remy, B. L. Stoddard, K. P. Pratt
Structure Of A Factor Viii C2 Domain-Immunoglobulin G4Kappa Fab Complex: Identification Of An Inhibitory Antibody Epitope On The Surface Of Factor Viii.
Blood V. 98 13 2001
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(48, 48)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_017341 (C2174G, chain C, )
02: VAR_028690 (P2177R, chain C, )
03: VAR_028691 (G2179V, chain C, )
04: VAR_028692 (E2181D, chain C, )
05: VAR_001197 (I2185T, chain C, )
06: VAR_001198 (I2190N, chain C, )
07: VAR_001199 (A2192P, chain C, )
08: VAR_028693 (A2201P, chain C, )
09: VAR_028695 (P2205L, chain C, )
10: VAR_001201 (R2209G, chain C, )
11: VAR_001202 (R2209L, chain C, )
12: VAR_028696 (R2209P, chain C, )
13: VAR_001203 (R2209Q, chain C, )
14: VAR_028697 (L2210F, chain C, )
15: VAR_001204 (V2223M, chain C, )
16: VAR_001205 (W2229C, chain C, )
17: VAR_028698 (W2229S, chain C, )
18: VAR_028699 (V2232A, chain C, )
19: VAR_028700 (V2232E, chain C, )
20: VAR_021356 (M2238V, chain C, )
21: VAR_028701 (T2245A, chain C, )
22: VAR_001206 (Q2246R, chain C, )
23: VAR_028702 (F2260C, chain C, )
24: VAR_028703 (F2260I, chain C, )
25: VAR_028704 (I2262T, chain C, )
26: VAR_065323 (D2267G, chain C, )
27: VAR_028705 (W2271L, chain C, )
28: VAR_028706 (G2285V, chain C, )
29: VAR_015134 (D2288A, chain C, )
30: VAR_001207 (P2300L, chain C, )
31: VAR_001208 (P2300S, chain C, )
32: VAR_001209 (R2304C, chain C, )
33: VAR_028707 (R2304G, chain C, )
34: VAR_001210 (R2304H, chain C, )
35: VAR_028708 (R2304L, chain C, )
36: VAR_028709 (R2307G, chain C, )
37: VAR_001211 (R2307L, chain C, )
38: VAR_028710 (R2307P, chain C, )
39: VAR_001212 (R2307Q, chain C, )
40: VAR_028711 (Q2311P, chain C, )
41: VAR_028712 (W2313R, chain C, )
42: VAR_065324 (I2317F, chain C, )
43: VAR_028713 (R2320T, chain C, )
44: VAR_008968 (G2325C, chain C, )
45: VAR_065325 (G2325D, chain C, )
46: VAR_028714 (G2325S, chain C, )
47: VAR_028715 (C2326S, chain C, )
48: VAR_028716 (C2326Y, chain C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_017341
C
2193
G
FA8_HUMAN
Disease (HEMA)
---
C
C
2174
G
02
UniProt
VAR_028690
P
2196
R
FA8_HUMAN
Disease (HEMA)
---
C
P
2177
R
03
UniProt
VAR_028691
G
2198
V
FA8_HUMAN
Disease (HEMA)
---
C
G
2179
V
04
UniProt
VAR_028692
E
2200
D
FA8_HUMAN
Disease (HEMA)
---
C
E
2181
D
05
UniProt
VAR_001197
I
2204
T
FA8_HUMAN
Disease (HEMA)
---
C
I
2185
T
06
UniProt
VAR_001198
I
2209
N
FA8_HUMAN
Disease (HEMA)
---
C
I
2190
N
07
UniProt
VAR_001199
A
2211
P
FA8_HUMAN
Disease (HEMA)
---
C
A
2192
P
08
UniProt
VAR_028693
A
2220
P
FA8_HUMAN
Disease (HEMA)
---
C
A
2201
P
09
UniProt
VAR_028695
P
2224
L
FA8_HUMAN
Disease (HEMA)
---
C
P
2205
L
10
UniProt
VAR_001201
R
2228
G
FA8_HUMAN
Disease (HEMA)
---
C
R
2209
G
11
UniProt
VAR_001202
R
2228
L
FA8_HUMAN
Disease (HEMA)
---
C
R
2209
L
12
UniProt
VAR_028696
R
2228
P
FA8_HUMAN
Disease (HEMA)
---
C
R
2209
P
13
UniProt
VAR_001203
R
2228
Q
FA8_HUMAN
Disease (HEMA)
---
C
R
2209
Q
14
UniProt
VAR_028697
L
2229
F
FA8_HUMAN
Disease (HEMA)
---
C
L
2210
F
15
UniProt
VAR_001204
V
2242
M
FA8_HUMAN
Polymorphism
---
C
V
2223
M
16
UniProt
VAR_001205
W
2248
C
FA8_HUMAN
Disease (HEMA)
---
C
W
2229
C
17
UniProt
VAR_028698
W
2248
S
FA8_HUMAN
Disease (HEMA)
---
C
W
2229
S
18
UniProt
VAR_028699
V
2251
A
FA8_HUMAN
Disease (HEMA)
---
C
V
2232
A
19
UniProt
VAR_028700
V
2251
E
FA8_HUMAN
Disease (HEMA)
---
C
V
2232
E
20
UniProt
VAR_021356
M
2257
V
FA8_HUMAN
Polymorphism
1800297
C
M
2238
V
21
UniProt
VAR_028701
T
2264
A
FA8_HUMAN
Disease (HEMA)
---
C
T
2245
A
22
UniProt
VAR_001206
Q
2265
R
FA8_HUMAN
Disease (HEMA)
---
C
Q
2246
R
23
UniProt
VAR_028702
F
2279
C
FA8_HUMAN
Disease (HEMA)
---
C
F
2260
C
24
UniProt
VAR_028703
F
2279
I
FA8_HUMAN
Disease (HEMA)
---
C
F
2260
I
25
UniProt
VAR_028704
I
2281
T
FA8_HUMAN
Disease (HEMA)
---
C
I
2262
T
26
UniProt
VAR_065323
D
2286
G
FA8_HUMAN
Disease (HEMA)
---
C
D
2267
G
27
UniProt
VAR_028705
W
2290
L
FA8_HUMAN
Disease (HEMA)
---
C
W
2271
L
28
UniProt
VAR_028706
G
2304
V
FA8_HUMAN
Disease (HEMA)
---
C
G
2285
V
29
UniProt
VAR_015134
D
2307
A
FA8_HUMAN
Disease (HEMA)
---
C
D
2288
A
30
UniProt
VAR_001207
P
2319
L
FA8_HUMAN
Disease (HEMA)
---
C
P
2300
L
31
UniProt
VAR_001208
P
2319
S
FA8_HUMAN
Disease (HEMA)
---
C
P
2300
S
32
UniProt
VAR_001209
R
2323
C
FA8_HUMAN
Disease (HEMA)
---
C
R
2304
C
33
UniProt
VAR_028707
R
2323
G
FA8_HUMAN
Disease (HEMA)
---
C
R
2304
G
34
UniProt
VAR_001210
R
2323
H
FA8_HUMAN
Disease (HEMA)
---
C
R
2304
H
35
UniProt
VAR_028708
R
2323
L
FA8_HUMAN
Disease (HEMA)
---
C
R
2304
L
36
UniProt
VAR_028709
R
2326
G
FA8_HUMAN
Disease (HEMA)
---
C
R
2307
G
37
UniProt
VAR_001211
R
2326
L
FA8_HUMAN
Disease (HEMA)
---
C
R
2307
L
38
UniProt
VAR_028710
R
2326
P
FA8_HUMAN
Disease (HEMA)
---
C
R
2307
P
39
UniProt
VAR_001212
R
2326
Q
FA8_HUMAN
Disease (HEMA)
---
C
R
2307
Q
40
UniProt
VAR_028711
Q
2330
P
FA8_HUMAN
Disease (HEMA)
---
C
Q
2311
P
41
UniProt
VAR_028712
W
2332
R
FA8_HUMAN
Disease (HEMA)
---
C
W
2313
R
42
UniProt
VAR_065324
I
2336
F
FA8_HUMAN
Disease (HEMA)
---
C
I
2317
F
43
UniProt
VAR_028713
R
2339
T
FA8_HUMAN
Disease (HEMA)
---
C
R
2320
T
44
UniProt
VAR_008968
G
2344
C
FA8_HUMAN
Disease (HEMA)
---
C
G
2325
C
45
UniProt
VAR_065325
G
2344
D
FA8_HUMAN
Disease (HEMA)
---
C
G
2325
D
46
UniProt
VAR_028714
G
2344
S
FA8_HUMAN
Disease (HEMA)
---
C
G
2325
S
47
UniProt
VAR_028715
C
2345
S
FA8_HUMAN
Disease (HEMA)
---
C
C
2326
S
48
UniProt
VAR_028716
C
2345
Y
FA8_HUMAN
Disease (HEMA)
---
C
C
2326
Y
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: FA58C_3 ()
2: FA58C_1 ()
3: FA58C_2 ()
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FA58C_3
PS50022
Coagulation factors 5/8 type C domain (FA58C) profile.
FA8_HUMAN
2040-2188
2193-2345
1
-
C:2174-2326
2
FA58C_1
PS01285
Coagulation factors 5/8 type C domain (FA58C) signature 1.
FA8_HUMAN
2080-2107
2237-2266
1
-
C:2218-2247
3
FA58C_2
PS01286
Coagulation factors 5/8 type C domain (FA58C) signature 2.
FA8_HUMAN
2172-2188
2329-2345
1
-
C:2310-2326
[
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]
Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(5, 5)
Info
All SCOP Domains
1a: SCOP_d1iqdc_ (C:)
2a: SCOP_d1iqdb2 (B:115-212)
3a: SCOP_d1iqda2 (A:109-212)
4a: SCOP_d1iqdb1 (B:1-114)
5a: SCOP_d1iqda1 (A:2-108)
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)
(
)
Folds
(
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(
)
Superfamilies
(
)
(
)
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(
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Galactose-binding domain-like
(314)
Superfamily
:
Galactose-binding domain-like
(314)
Family
:
Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain)
(17)
Protein domain
:
C2 domain of factor VIII
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d1iqdc_
C:
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Human (Homo sapiens) [TaxId: 9606]
(179)
2a
d1iqdb2
B:115-212
Protein domain
:
Immunoglobulin light chain kappa constant domain, CL-kappa
(495)
Human (Homo sapiens) [TaxId: 9606]
(144)
3a
d1iqda2
A:109-212
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Human (Homo sapiens), cluster 1 [TaxId: 9606]
(37)
4a
d1iqdb1
B:1-114
Protein domain
:
Immunoglobulin light chain kappa variable domain, VL-kappa
(616)
Human (Homo sapiens), cluster 3.1 [TaxId: 9606]
(8)
5a
d1iqda1
A:2-108
[
close SCOP info
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CATH Domains
(2, 5)
Info
all CATH domains
1a: CATH_1iqdA02 (A:110-211)
1b: CATH_1iqdA01 (A:2-109)
1c: CATH_1iqdB02 (B:115-210)
1d: CATH_1iqdB01 (B:1-114)
2a: CATH_1iqdC00 (C:2174-2329)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
1iqdA02
A:110-211
1b
1iqdA01
A:2-109
1c
1iqdB02
B:115-210
1d
1iqdB01
B:1-114
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Galactose-binding domain-like
(195)
Human (Homo sapiens)
(39)
2a
1iqdC00
C:2174-2329
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Pfam Domains
(0, 0)
Info
all PFAM domains
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