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1ING
Biol. Unit 1
Info
Asym.Unit (187 KB)
Biol.Unit 1 (345 KB)
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(1)
Title
:
INFLUENZA A SUBTYPE N2 NEURAMINIDASE COMPLEXED WITH AROMATIC BANA109 INHIBITOR
Authors
:
M. J. Jedrzejas, M. Luo
Date
:
07 Jul 95 (Deposition) - 17 Aug 96 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Neuraminidase, Sialidase, Hydrolase, O-Glycosyl, Hydrolase (O- Glycosyl)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Singh, M. J. Jedrzejas, G. M. Air, M. Luo, W. G. Laver, W. J. Brouillette
Structure-Based Inhibitors Of Influenza Virus Sialidase. A Benzoic Acid Lead With Novel Interaction.
J. Med. Chem. V. 38 3217 1995
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(6, 60)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: ALPHA-L-FUCOSE (FUCa)
4a: BETA-L-FUCOSE (FULa)
5a: ALPHA-D-MANNOSE (MANa)
5b: ALPHA-D-MANNOSE (MANb)
5c: ALPHA-D-MANNOSE (MANc)
5d: ALPHA-D-MANNOSE (MANd)
5e: ALPHA-D-MANNOSE (MANe)
5f: ALPHA-D-MANNOSE (MANf)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
6f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6g: N-ACETYL-D-GLUCOSAMINE (NAGg)
6h: N-ACETYL-D-GLUCOSAMINE (NAGh)
6i: N-ACETYL-D-GLUCOSAMINE (NAGi)
6j: N-ACETYL-D-GLUCOSAMINE (NAGj)
6k: N-ACETYL-D-GLUCOSAMINE (NAGk)
6l: N-ACETYL-D-GLUCOSAMINE (NAGl)
6m: N-ACETYL-D-GLUCOSAMINE (NAGm)
6n: N-ACETYL-D-GLUCOSAMINE (NAGn)
6o: N-ACETYL-D-GLUCOSAMINE (NAGo)
6p: N-ACETYL-D-GLUCOSAMINE (NAGp)
7a: 4-(ACETYLAMINO)-3-[(HYDROXYACETYL)... (ST5a)
7b: 4-(ACETYLAMINO)-3-[(HYDROXYACETYL)... (ST5b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
8
Ligand/Ion
BETA-D-MANNOSE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
FUC
2
Ligand/Ion
ALPHA-L-FUCOSE
4
FUL
2
Ligand/Ion
BETA-L-FUCOSE
5
MAN
12
Ligand/Ion
ALPHA-D-MANNOSE
6
NAG
32
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
ST5
4
Ligand/Ion
4-(ACETYLAMINO)-3-[(HYDROXYACETYL)AMINO]BENZOIC ACID
[
close Hetero Component info
]
Sites
(34, 34)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CAA (UNKNOWN)
20: CAB (UNKNOWN)
21: CC1 (SOFTWARE)
22: CC2 (SOFTWARE)
23: CC3 (SOFTWARE)
24: CC4 (SOFTWARE)
25: CC5 (SOFTWARE)
26: CC6 (SOFTWARE)
27: CC7 (SOFTWARE)
28: CC8 (SOFTWARE)
29: CC9 (SOFTWARE)
30: DC1 (SOFTWARE)
31: DC2 (SOFTWARE)
32: DC3 (SOFTWARE)
33: DC4 (SOFTWARE)
34: DC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:86 , SER A:88 , TYR A:284 , NAG A:473 , NAG A:485
BINDING SITE FOR RESIDUE NAG A 472
02
AC2
SOFTWARE
NAG A:472
BINDING SITE FOR RESIDUE NAG A 473
03
AC3
SOFTWARE
ASN A:146 , TRP A:437 , NAG A:475 , FUL A:477
BINDING SITE FOR RESIDUE NAG A 474
04
AC4
SOFTWARE
NAG A:474 , BMA A:476
BINDING SITE FOR RESIDUE NAG A 475
05
AC5
SOFTWARE
NAG A:475
BINDING SITE FOR RESIDUE BMA A 476
06
AC6
SOFTWARE
NAG A:474 , MAN A:481
BINDING SITE FOR RESIDUE FUL A 477
07
AC7
SOFTWARE
ASP A:197 , ASN A:200 , NAG A:479 , MAN A:483 , TYR B:453 , GLY B:454 , THR B:455 , HOH B:490
BINDING SITE FOR RESIDUE NAG A 478
08
AC8
SOFTWARE
NAG A:478 , BMA A:480 , MAN A:483
BINDING SITE FOR RESIDUE NAG A 479
09
AC9
SOFTWARE
NAG A:479 , MAN A:481 , MAN A:483
BINDING SITE FOR RESIDUE BMA A 480
10
BC1
SOFTWARE
FUL A:477 , BMA A:480 , MAN A:482
BINDING SITE FOR RESIDUE MAN A 481
11
BC2
SOFTWARE
MAN A:481 , ASN B:463
BINDING SITE FOR RESIDUE MAN A 482
12
BC3
SOFTWARE
ASP A:197 , NAG A:478 , NAG A:479 , BMA A:480 , VAL B:396 , THR B:455 , GLY B:456 , SER B:457
BINDING SITE FOR RESIDUE MAN A 483
13
BC4
SOFTWARE
ASN A:234 , NAG A:485
BINDING SITE FOR RESIDUE NAG A 484
14
BC5
SOFTWARE
NAG A:472 , NAG A:484
BINDING SITE FOR RESIDUE NAG A 485
15
BC6
SOFTWARE
ASN B:86 , SER B:88 , TYR B:284 , NAG B:473 , NAG B:485
BINDING SITE FOR RESIDUE NAG B 472
16
BC7
SOFTWARE
NAG B:472
BINDING SITE FOR RESIDUE NAG B 473
17
BC8
SOFTWARE
ASN B:146 , TRP B:437 , NAG B:475 , FUC B:477
BINDING SITE FOR RESIDUE NAG B 474
18
BC9
SOFTWARE
NAG B:474 , BMA B:476
BINDING SITE FOR RESIDUE NAG B 475
19
CAA
UNKNOWN
ARG A:118 , GLU A:119 , ASP A:151 , ARG A:152 , TRP A:178 , ILE A:222 , ARG A:224 , GLU A:276 , ARG A:292 , ARG A:371 , TYR A:406
SUBSTRATE (SIALIC ACID) BINDING RESIDUES CATALYTIC SITE IN CHAIN A
20
CAB
UNKNOWN
ARG B:118 , GLU B:119 , ASP B:151 , ARG B:152 , TRP B:178 , ILE B:222 , ARG B:224 , GLU B:276 , ARG B:292 , ARG B:371 , TYR B:406
SUBSTRATE (SIALIC ACID) BINDING RESIDUES CATALYTIC SITE IN CHAIN B
21
CC1
SOFTWARE
NAG B:475
BINDING SITE FOR RESIDUE BMA B 476
22
CC2
SOFTWARE
NAG B:474
BINDING SITE FOR RESIDUE FUC B 477
23
CC3
SOFTWARE
TYR A:453 , GLY A:454 , THR A:455 , ASP B:197 , ASN B:200 , NAG B:479 , MAN B:483 , HOH B:518
BINDING SITE FOR RESIDUE NAG B 478
24
CC4
SOFTWARE
NAG B:478 , BMA B:480 , MAN B:483
BINDING SITE FOR RESIDUE NAG B 479
25
CC5
SOFTWARE
NAG B:479 , MAN B:481 , MAN B:483
BINDING SITE FOR RESIDUE BMA B 480
26
CC6
SOFTWARE
BMA B:480 , MAN B:482
BINDING SITE FOR RESIDUE MAN B 481
27
CC7
SOFTWARE
MAN B:481
BINDING SITE FOR RESIDUE MAN B 482
28
CC8
SOFTWARE
VAL A:396 , THR A:455 , GLY A:456 , SER A:457 , ASP B:197 , NAG B:478 , NAG B:479 , BMA B:480
BINDING SITE FOR RESIDUE MAN B 483
29
CC9
SOFTWARE
ASN B:234 , NAG B:485
BINDING SITE FOR RESIDUE NAG B 484
30
DC1
SOFTWARE
NAG B:472 , NAG B:484
BINDING SITE FOR RESIDUE NAG B 485
31
DC2
SOFTWARE
ASP A:293 , GLY A:297 , ASP A:324 , GLY A:345 , GLN A:347
BINDING SITE FOR RESIDUE CA A 470
32
DC3
SOFTWARE
ASP B:293 , GLY B:297 , ASP B:324 , GLY B:345 , GLN B:347
BINDING SITE FOR RESIDUE CA B 470
33
DC4
SOFTWARE
ARG A:118 , ASP A:151 , ARG A:152 , ALA A:246 , GLU A:276 , ARG A:292 , ASN A:294 , ARG A:371 , TYR A:406 , HOH A:571
BINDING SITE FOR RESIDUE ST5 A 471
34
DC5
SOFTWARE
ARG B:118 , ASP B:151 , ARG B:152 , ALA B:246 , GLU B:276 , ARG B:292 , ASN B:294 , ARG B:371 , TYR B:406 , HOH B:583
BINDING SITE FOR RESIDUE ST5 B 471
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
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[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1inga_ (A:)
1b: SCOP_d1ingb_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
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(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Sialidases
(238)
Family
:
Sialidases (neuraminidases)
(178)
Protein domain
:
Influenza neuraminidase
(78)
Influenza A virus, different strains [TaxId: 11320]
(61)
1a
d1inga_
A:
1b
d1ingb_
B:
[
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]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1ingA00 (A:82-469)
1b: CATH_1ingB00 (B:82-469)
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
6 Propellor
(215)
Topology
:
Neuraminidase
(215)
Homologous Superfamily
:
[code=2.120.10.10, no name defined]
(150)
Influenza a virus. Organism_taxid: 11320. Strain: a/tokyo/3/67
(2)
1a
1ingA00
A:82-469
1b
1ingB00
B:82-469
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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