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1IMH
Asym. Unit
Info
Asym.Unit (106 KB)
Biol.Unit 1 (102 KB)
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(1)
Title
:
TONEBP/DNA COMPLEX
Authors
:
J. C. Stroud, C. Lopez-Rodriguez, A. Rao, L. Chen
Date
:
10 May 01 (Deposition) - 01 Feb 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.86
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Beta Barrel, Protein-Dna Complex, Double Helix, Dna Encirclement, Transcription/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. C. Stroud, C. Lopez-Rodriguez, A. Rao, L. Chen
Structure Of A Tonebp-Dna Complex Reveals Dna Encircled By A Transcription Factor.
Nat. Struct. Biol. V. 9 90 2002
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: REL_2 (C:188-367,D:188-367)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
REL_2
PS50254
NF-kappa-B/Rel/dorsal domain profile.
NFAT5_HUMAN
264-443
2
C:188-367
D:188-367
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Exons
(6, 12)
Info
All Exons
Exon 1.6 (C:188-241 | D:188-241)
Exon 1.7 (C:242-305 | D:242-305)
Exon 1.8 (C:305-363 | D:305-363)
Exon 1.9 (C:363-408 | D:363-408)
Exon 1.10 (C:408-425 | D:408-425)
Exon 1.11 (C:426-468 | D:426-468)
View:
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All Exon Boundaries
1: Boundary 1.5/1.6
2: Boundary 1.6/1.7
3: Boundary 1.7/1.8
4: Boundary 1.8/1.9
5: Boundary 1.9/1.10
6: Boundary 1.10/1.11
7: Boundary 1.11/1.12a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000354436
1b
ENSE00001870018
chr16:
69599887-69600277
391
NFAT5_HUMAN
1-25
25
0
-
-
1.3
ENST00000354436
3
ENSE00001679106
chr16:
69660306-69660431
126
NFAT5_HUMAN
25-67
43
0
-
-
1.5
ENST00000354436
5
ENSE00001615344
chr16:
69680931-69681489
559
NFAT5_HUMAN
67-253
187
0
-
-
1.6
ENST00000354436
6
ENSE00001290443
chr16:
69687139-69687331
193
NFAT5_HUMAN
253-317
65
2
C:188-241
D:188-241
54
54
1.7
ENST00000354436
7
ENSE00001319006
chr16:
69689512-69689702
191
NFAT5_HUMAN
318-381
64
2
C:242-305
D:242-305
64
64
1.8
ENST00000354436
8
ENSE00001319109
chr16:
69693630-69693802
173
NFAT5_HUMAN
381-439
59
2
C:305-363
D:305-363
59
59
1.9
ENST00000354436
9
ENSE00001297928
chr16:
69703880-69704014
135
NFAT5_HUMAN
439-484
46
2
C:363-408
D:363-408
46
46
1.10
ENST00000354436
10
ENSE00001317689
chr16:
69704139-69704191
53
NFAT5_HUMAN
484-501
18
2
C:408-425
D:408-425
18
18
1.11
ENST00000354436
11
ENSE00001296763
chr16:
69711106-69711238
133
NFAT5_HUMAN
502-546
45
2
C:426-468
D:426-468
43
43
1.12a
ENST00000354436
12a
ENSE00001320052
chr16:
69718790-69718873
84
NFAT5_HUMAN
546-574
29
0
-
-
1.13
ENST00000354436
13
ENSE00001298766
chr16:
69724843-69724991
149
NFAT5_HUMAN
574-623
50
0
-
-
1.14
ENST00000354436
14
ENSE00001301675
chr16:
69725652-69728142
2491
NFAT5_HUMAN
624-1454
831
0
-
-
1.15
ENST00000354436
15
ENSE00001389101
chr16:
69729039-69729282
244
NFAT5_HUMAN
1454-1531
78
0
-
-
1.16b
ENST00000354436
16b
ENSE00001841643
chr16:
69730263-69738569
8307
NFAT5_HUMAN
-
0
0
-
-
[
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1imhc2 (C:188-367)
1b: SCOP_d1imhd2 (D:188-367)
2a: SCOP_d1imhc1 (C:368-468)
2b: SCOP_d1imhd1 (D:368-468)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
p53-like transcription factors
(153)
Family
:
Rel/Dorsal transcription factors, DNA-binding domain
(34)
Protein domain
:
T-cell transcription factor NFAT5 (TONEBP), DNA-binding domain
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1imhc2
C:188-367
1b
d1imhd2
D:188-367
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
(56)
Protein domain
:
T-cell transcription factor NFAT5 (TONEBP)
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d1imhc1
C:368-468
2b
d1imhd1
D:368-468
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1imhC01 (C:193-362)
1b: CATH_1imhD01 (D:193-362)
2a: CATH_1imhC02 (C:363-468)
2b: CATH_1imhD02 (D:363-468)
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Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.340, no name defined]
(30)
[unclassified]
(23)
1a
1imhC01
C:193-362
1b
1imhD01
D:193-362
Homologous Superfamily
:
Immunoglobulins
(2282)
[unclassified]
(54)
2a
1imhC02
C:363-468
2b
1imhD02
D:363-468
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (106 KB)
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