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Getting 'Exon' information from database.
1IMD
Asym. Unit
Info
Asym.Unit (91 KB)
Biol.Unit 1 (86 KB)
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(1)
Title
:
STRUCTURAL STUDIES OF METAL BINDING BY INOSITOL MONOPHOSPHATASE: EVIDENCE FOR TWO-METAL ION CATALYSIS
Authors
:
R. Bone
Date
:
08 Feb 94 (Deposition) - 27 Feb 95 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Bone, L. Frank, J. P. Springer, J. R. Atack
Structural Studies Of Metal Binding By Inositol Monophosphatase: Evidence For Two-Metal Ion Catalysis.
Biochemistry V. 33 9468 1994
(for further references see the
PDB file header
)
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: MANGANESE (II) ION (MNa)
1b: MANGANESE (II) ION (MNb)
1c: MANGANESE (II) ION (MNc)
1d: MANGANESE (II) ION (MNd)
2a: PHOSPHATE ION (PO4a)
2b: PHOSPHATE ION (PO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MN
4
Ligand/Ion
MANGANESE (II) ION
2
PO4
2
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: M1 (UNKNOWN)
8: M2 (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:70 , ASP A:90 , ILE A:92 , PO4 A:280 , HOH A:281
BINDING SITE FOR RESIDUE MN A 278
2
AC2
SOFTWARE
ASP A:90 , ASP A:93 , ASP A:220 , PO4 A:280
BINDING SITE FOR RESIDUE MN A 279
3
AC3
SOFTWARE
GLU A:70 , ASP A:90 , ILE A:92 , ASP A:93 , GLY A:94 , THR A:95 , MN A:278 , MN A:279 , HOH A:282 , HOH A:296
BINDING SITE FOR RESIDUE PO4 A 280
4
AC4
SOFTWARE
GLU B:70 , ASP B:90 , ILE B:92 , PO4 B:280 , HOH B:281
BINDING SITE FOR RESIDUE MN B 278
5
AC5
SOFTWARE
ASP B:90 , ASP B:93 , ASP B:220 , PO4 B:280
BINDING SITE FOR RESIDUE MN B 279
6
AC6
SOFTWARE
GLU B:70 , ASP B:90 , ILE B:92 , ASP B:93 , GLY B:94 , THR B:95 , MN B:278 , MN B:279 , HOH B:282
BINDING SITE FOR RESIDUE PO4 B 280
7
M1
UNKNOWN
GLU A:70 , ASP A:90 , PRO A:91 , ILE A:92 , ASP A:93 , GLY A:94 , THR A:95 , ASP A:220
NULL
8
M2
UNKNOWN
GLU B:70 , ASP B:90 , PRO B:91 , ILE B:92 , ASP B:93 , GLY B:94 , THR B:95 , ASP B:220
NULL
[
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]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_049600 (I109V, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_049600
I
109
V
IMPA1_HUMAN
Polymorphism
204781
A/B
I
109
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: IMP_1 (A:87-100,B:87-100)
2: IMP_2 (A:219-233,B:219-233)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IMP_1
PS00629
Inositol monophosphatase family signature 1.
IMPA1_HUMAN
87-100
2
A:87-100
B:87-100
2
IMP_2
PS00630
Inositol monophosphatase family signature 2.
IMPA1_HUMAN
219-233
2
A:219-233
B:219-233
[
close PROSITE info
]
Exons
(8, 16)
Info
All Exons
Exon 1.3a (A:5-21 | B:5-21)
Exon 1.4a (A:22-66 | B:22-66)
Exon 1.5 (A:66-101 | B:66-101)
Exon 1.7a (A:101-116 | B:101-116)
Exon 1.9d (A:117-153 | B:117-153)
Exon 1.10d (A:153-189 | B:153-189)
Exon 1.11b (A:189-240 | B:189-240)
Exon 1.12c (A:240-271 | B:240-277)
View:
Select:
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All Exon Boundaries
1: Boundary 1.1a/1.3a
2: Boundary 1.3a/1.4a
3: Boundary 1.4a/1.5
4: Boundary 1.5/1.7a
5: Boundary 1.7a/1.9d
6: Boundary 1.9d/1.10d
7: Boundary 1.10d/1.11b
8: Boundary 1.11b/1.12c
9: Boundary 1.12c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000256108
1a
ENSE00002126032
chr8:
82598928-82598487
442
IMPA1_HUMAN
-
0
0
-
-
1.3a
ENST00000256108
3a
ENSE00002163677
chr8:
82593819-82593733
87
IMPA1_HUMAN
1-21
21
2
A:5-21
B:5-21
17
17
1.4a
ENST00000256108
4a
ENSE00000909941
chr8:
82593018-82592885
134
IMPA1_HUMAN
22-66
45
2
A:22-66
B:22-66
45
45
1.5
ENST00000256108
5
ENSE00000909940
chr8:
82591465-82591361
105
IMPA1_HUMAN
66-101
36
2
A:66-101
B:66-101
36
36
1.7a
ENST00000256108
7a
ENSE00000909939
chr8:
82588514-82588469
46
IMPA1_HUMAN
101-116
16
2
A:101-116
B:101-116
16
16
1.9d
ENST00000256108
9d
ENSE00002145495
chr8:
82586184-82586076
109
IMPA1_HUMAN
117-153
37
2
A:117-153
B:117-153
37
37
1.10d
ENST00000256108
10d
ENSE00002149892
chr8:
82583282-82583174
109
IMPA1_HUMAN
153-189
37
2
A:153-189
B:153-189
37
37
1.11b
ENST00000256108
11b
ENSE00001682001
chr8:
82572902-82572751
152
IMPA1_HUMAN
189-240
52
2
A:189-240
B:189-240
52
52
1.12c
ENST00000256108
12c
ENSE00001747149
chr8:
82571701-82570196
1506
IMPA1_HUMAN
240-277
38
2
A:240-271
B:240-277
32
38
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1imda_ (A:)
1b: SCOP_d1imdb_ (B:)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Carbohydrate phosphatase
(140)
Superfamily
:
Carbohydrate phosphatase
(140)
Family
:
Inositol monophosphatase/fructose-1,6-bisphosphatase-like
(121)
Protein domain
:
Inositol monophosphatase
(9)
Human (Homo sapiens) [TaxId: 9606]
(9)
1a
d1imda_
A:
1b
d1imdb_
B:
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1imdA01 (A:5-146)
1b: CATH_1imdB01 (B:5-146)
2a: CATH_1imdB02 (B:147-276)
2b: CATH_1imdA02 (A:147-270)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Fructose-1,6-Bisphosphatase; Chain A, domain 1
(114)
Homologous Superfamily
:
Fructose-1,6-Bisphosphatase, subunit A, domain 1
(114)
Human (Homo sapiens)
(25)
1a
1imdA01
A:5-146
1b
1imdB01
B:5-146
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
D-Maltodextrin-Binding Protein; domain 2
(600)
Homologous Superfamily
:
[code=3.40.190.80, no name defined]
(109)
Human (Homo sapiens)
(25)
2a
1imdB02
B:147-276
2b
1imdA02
A:147-270
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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