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1IM3
Asym. Unit
Info
Asym.Unit (352 KB)
Biol.Unit 1 (93 KB)
Biol.Unit 2 (92 KB)
Biol.Unit 3 (91 KB)
Biol.Unit 4 (91 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HUMAN CYTOMEGALOVIRUS PROTEIN US2 BOUND TO THE MHC CLASS I MOLECULE HLA-A2/TAX
Authors
:
B. E. Gewurz, R. Gaudet, D. Tortorella, E. W. Wang, H. L. Ploegh, D. C. Wiley
Date
:
09 May 01 (Deposition) - 06 Jun 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Biol. Unit 3: I,J,K,L (1x)
Biol. Unit 4: M,N,O,P (1x)
Keywords
:
Beta Sheet, Beta Sandwhich, Immunoglobulin (Ig) Fold, Immunoglobulin (Ig)-Like Domain, Protein Complex, Alpha Helix, Viral Protein/Immune System Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. E. Gewurz, R. Gaudet, D. Tortorella, E. W. Wang, H. L. Ploegh, D. C. Wiley
Antigen Presentation Subverted: Structure Of The Human Cytomegalovirus Protein Us2 Bound To The Class I Molecule Hla-A2.
Proc. Natl. Acad. Sci. Usa V. 98 6794 2001
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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]
Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(22, 88)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_004334 (F9Y, chain A/E/I/M, )
02: VAR_004335 (D30N, chain A/E/I/M, )
03: VAR_016726 (A41G, chain A/E/I/M, )
04: VAR_004336 (Q43R, chain A/E/I/M, )
05: VAR_004337 (K66N, chain A/E/I/M, )
06: VAR_016727 (H70Q, chain A/E/I/M, )
07: VAR_004338 (T73I, chain A/E/I/M, )
08: VAR_016728 (H74D, chain A/E/I/M, )
09: VAR_004339 (V95L, chain A/E/I/M, )
10: VAR_004340 (R97M, chain A/E/I/M, )
11: VAR_004341 (Y99C, chain A/E/I/M, )
12: VAR_004342 (Y99F, chain A/E/I/M, )
13: VAR_004343 (W107G, chain A/E/I/M, )
14: VAR_004344 (M138K, chain A/E/I/M, )
15: VAR_004345 (A149T, chain A/E/I/M, )
16: VAR_004346 (V152E, chain A/E/I/M, )
17: VAR_004348 (L156Q, chain A/E/I/M, )
18: VAR_004347 (L156W, chain A/E/I/M, )
19: VAR_004349 (T163E, chain A/E/I/M, )
20: VAR_016729 (E166D, chain A/E/I/M, )
21: VAR_016730 (W167G, chain A/E/I/M, )
22: VAR_004350 (A236E, chain A/E/I/M, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_004334
F
33
Y
1A02_HUMAN
Polymorphism
---
A/E/I/M
F
9
Y
02
UniProt
VAR_004335
D
54
N
1A02_HUMAN
Polymorphism
---
A/E/I/M
D
30
N
03
UniProt
VAR_016726
A
65
G
1A02_HUMAN
Polymorphism
---
A/E/I/M
A
41
G
04
UniProt
VAR_004336
Q
67
R
1A02_HUMAN
Polymorphism
---
A/E/I/M
Q
43
R
05
UniProt
VAR_004337
K
90
N
1A02_HUMAN
Polymorphism
---
A/E/I/M
K
66
N
06
UniProt
VAR_016727
H
94
Q
1A02_HUMAN
Polymorphism
---
A/E/I/M
H
70
Q
07
UniProt
VAR_004338
T
97
I
1A02_HUMAN
Polymorphism
---
A/E/I/M
T
73
I
08
UniProt
VAR_016728
H
98
D
1A02_HUMAN
Polymorphism
---
A/E/I/M
H
74
D
09
UniProt
VAR_004339
V
119
L
1A02_HUMAN
Polymorphism
---
A/E/I/M
V
95
L
10
UniProt
VAR_004340
R
121
M
1A02_HUMAN
Polymorphism
---
A/E/I/M
R
97
M
11
UniProt
VAR_004341
Y
123
C
1A02_HUMAN
Polymorphism
---
A/E/I/M
Y
99
C
12
UniProt
VAR_004342
Y
123
F
1A02_HUMAN
Polymorphism
---
A/E/I/M
Y
99
F
13
UniProt
VAR_004343
W
131
G
1A02_HUMAN
Polymorphism
---
A/E/I/M
W
107
G
14
UniProt
VAR_004344
M
162
K
1A02_HUMAN
Polymorphism
---
A/E/I/M
M
138
K
15
UniProt
VAR_004345
A
173
T
1A02_HUMAN
Polymorphism
---
A/E/I/M
A
149
T
16
UniProt
VAR_004346
V
176
E
1A02_HUMAN
Polymorphism
---
A/E/I/M
V
152
E
17
UniProt
VAR_004348
L
180
Q
1A02_HUMAN
Polymorphism
---
A/E/I/M
L
156
Q
18
UniProt
VAR_004347
L
180
W
1A02_HUMAN
Polymorphism
---
A/E/I/M
L
156
W
19
UniProt
VAR_004349
T
187
E
1A02_HUMAN
Polymorphism
---
A/E/I/M
T
163
E
20
UniProt
VAR_016729
E
190
D
1A02_HUMAN
Polymorphism
---
A/E/I/M
E
166
D
21
UniProt
VAR_016730
W
191
G
1A02_HUMAN
Polymorphism
---
A/E/I/M
W
167
G
22
UniProt
VAR_004350
A
260
E
1A02_HUMAN
Polymorphism
---
A/E/I/M
A
236
E
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (B:78-84,F:78-84,J:78-84,N:78-84,A:...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_HUMAN
98-104
4
B:78-84
F:78-84
J:78-84
N:78-84
1A02_HUMAN
281-287
4
A:257-263
E:257-263
I:257-263
M:257-263
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 16)
Info
All SCOP Domains
1a: SCOP_d1im3d_ (D:)
1b: SCOP_d1im3h_ (H:)
1c: SCOP_d1im3l_ (L:)
1d: SCOP_d1im3p_ (P:)
2a: SCOP_d1im3b_ (B:)
2b: SCOP_d1im3f_ (F:)
2c: SCOP_d1im3j_ (J:)
2d: SCOP_d1im3n_ (N:)
3a: SCOP_d1im3a1 (A:182-275)
3b: SCOP_d1im3e1 (E:182-275)
3c: SCOP_d1im3i1 (I:182-275)
3d: SCOP_d1im3m1 (M:182-275)
4a: SCOP_d1im3a2 (A:1-181)
4b: SCOP_d1im3e2 (E:1-181)
4c: SCOP_d1im3i2 (I:1-181)
4d: SCOP_d1im3m2 (M:1-181)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
Cytomegalovirus protein US2
(1)
Protein domain
:
Cytomegalovirus protein US2
(1)
Human cytomegalovirus [TaxId: 10359]
(1)
1a
d1im3d_
D:
1b
d1im3h_
H:
1c
d1im3l_
L:
1d
d1im3p_
P:
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
beta2-microglobulin
(530)
Human (Homo sapiens) [TaxId: 9606]
(350)
2a
d1im3b_
B:
2b
d1im3f_
F:
2c
d1im3j_
J:
2d
d1im3n_
N:
Protein domain
:
Class I MHC, alpha-3 domain
(293)
Human (Homo sapiens) [TaxId: 9606]
(187)
3a
d1im3a1
A:182-275
3b
d1im3e1
E:182-275
3c
d1im3i1
I:182-275
3d
d1im3m1
M:182-275
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
MHC antigen-recognition domain
(533)
Protein domain
:
Class I MHC, alpha-1 and alpha-2 domains
(294)
Human (Homo sapiens), HLA-A2.1 [TaxId: 9606]
(92)
4a
d1im3a2
A:1-181
4b
d1im3e2
E:1-181
4c
d1im3i2
I:1-181
4d
d1im3m2
M:1-181
[
close SCOP info
]
CATH Domains
(3, 16)
Info
all CATH domains
1a: CATH_1im3A01 (A:1-181)
1b: CATH_1im3E01 (E:1-181)
1c: CATH_1im3I01 (I:1-181)
1d: CATH_1im3M01 (M:1-181)
2a: CATH_1im3D00 (D:43-137)
2b: CATH_1im3H00 (H:43-137)
2c: CATH_1im3L00 (L:43-137)
2d: CATH_1im3P00 (P:43-137)
3a: CATH_1im3B00 (B:0-99)
3b: CATH_1im3A02 (A:182-270)
3c: CATH_1im3E02 (E:182-270)
3d: CATH_1im3I02 (I:182-270)
3e: CATH_1im3M02 (M:182-270)
3f: CATH_1im3F00 (F:0-99)
3g: CATH_1im3J00 (J:0-99)
3h: CATH_1im3N00 (N:0-99)
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Classes
(
)
(
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Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
(402)
Homologous Superfamily
:
Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1
(400)
Human (Homo sapiens)
(249)
1a
1im3A01
A:1-181
1b
1im3E01
E:1-181
1c
1im3I01
I:1-181
1d
1im3M01
M:1-181
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.1200, no name defined]
(1)
Human (Homo sapiens)
(1)
2a
1im3D00
D:43-137
2b
1im3H00
H:43-137
2c
1im3L00
L:43-137
2d
1im3P00
P:43-137
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
3a
1im3B00
B:0-99
3b
1im3A02
A:182-270
3c
1im3E02
E:182-270
3d
1im3I02
I:182-270
3e
1im3M02
M:182-270
3f
1im3F00
F:0-99
3g
1im3J00
J:0-99
3h
1im3N00
N:0-99
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asym.Unit (352 KB)
Header - Asym.Unit
Biol.Unit 1 (93 KB)
Header - Biol.Unit 1
Biol.Unit 2 (92 KB)
Header - Biol.Unit 2
Biol.Unit 3 (91 KB)
Header - Biol.Unit 3
Biol.Unit 4 (91 KB)
Header - Biol.Unit 4
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