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1IKT
Asym. Unit
Info
Asym.Unit (27 KB)
Biol.Unit 1 (23 KB)
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(1)
Title
:
LIGANDED STEROL CARRIER PROTEIN TYPE 2 (SCP-2) LIKE DOMAIN OF HUMAN MULTIFUNCTIONAL ENZYME TYPE 2 (MFE-2)
Authors
:
A. M. Haapalainen, D. M. F. Van Aalten, T. Glumoff
Date
:
07 May 01 (Deposition) - 14 Nov 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Alfa-Beta Fold, Protein-Triton X-100 Complex, Hydrophobic Tunnel, Exposed Peroxisomal Targeting Signal Type 1 (Pts1), Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. M. Haapalainen, D. M. Van Aalten, G. Merilainen, J. E. Jalonen, P. Pirila, R. K. Wierenga, J. K. Hiltunen, T. Glumoff
Crystal Structure Of The Liganded Scp-2-Like Domain Of Human Peroxisomal Multifunctional Enzyme Type 2 At 1. 75 A Resolution.
J. Mol. Biol. V. 313 1127 2001
(for further references see the
PDB file header
)
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: OXTOXYNOL-10 (OXNa)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
OXN
1
Ligand/Ion
OXTOXYNOL-10
2
SO4
2
Ligand/Ion
SULFATE ION
[
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:101 , GLY A:102 , HOH A:1048 , HOH A:1125
BINDING SITE FOR RESIDUE SO4 A 121
2
AC2
SOFTWARE
GLU A:14 , HOH A:1311
BINDING SITE FOR RESIDUE SO4 A 122
3
AC3
SOFTWARE
TRP A:36 , PRO A:89 , GLN A:90 , PHE A:93 , MET A:105 , SER A:107 , GLN A:108 , GLN A:111 , LEU A:114
BINDING SITE FOR RESIDUE OXN A 123
[
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_052314 (T71I, chain A, )
2: VAR_052315 (M112V, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_052314
T
687
I
DHB4_HUMAN
Polymorphism
28943592
A
T
71
I
2
UniProt
VAR_052315
M
728
V
DHB4_HUMAN
Polymorphism
28943594
A
M
112
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
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Exons
(3, 3)
Info
All Exons
Exon 1.28 (A:6-49)
Exon 1.29b (A:49-91)
Exon 1.30i (A:92-120)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.27a/1.28
2: Boundary 1.28/1.29b
3: Boundary 1.29b/1.30i
4: Boundary 1.30i/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000256216
1a
ENSE00002062781
chr5:
118788138-118788328
191
DHB4_HUMAN
1-20
20
0
-
-
1.2b
ENST00000256216
2b
ENSE00001715680
chr5:
118792010-118792063
54
DHB4_HUMAN
20-38
19
0
-
-
1.4c
ENST00000256216
4c
ENSE00001645814
chr5:
118809603-118809710
108
DHB4_HUMAN
38-74
37
0
-
-
1.5b
ENST00000256216
5b
ENSE00001703065
chr5:
118810096-118810155
60
DHB4_HUMAN
74-94
21
0
-
-
1.6b
ENST00000256216
6b
ENSE00001607423
chr5:
118811401-118811422
22
DHB4_HUMAN
94-101
8
0
-
-
1.7a
ENST00000256216
7a
ENSE00001705604
chr5:
118811519-118811565
47
DHB4_HUMAN
101-117
17
0
-
-
1.10c
ENST00000256216
10c
ENSE00001647277
chr5:
118813112-118813196
85
DHB4_HUMAN
117-145
29
0
-
-
1.12f
ENST00000256216
12f
ENSE00001790487
chr5:
118814529-118814716
188
DHB4_HUMAN
145-208
64
0
-
-
1.13
ENST00000256216
13
ENSE00000972272
chr5:
118824887-118824978
92
DHB4_HUMAN
208-238
31
0
-
-
1.14
ENST00000256216
14
ENSE00000998891
chr5:
118827795-118827819
25
DHB4_HUMAN
239-247
9
0
-
-
1.15c
ENST00000256216
15c
ENSE00001143969
chr5:
118829513-118829641
129
DHB4_HUMAN
247-290
44
0
-
-
1.17c
ENST00000256216
17c
ENSE00001143964
chr5:
118832238-118832341
104
DHB4_HUMAN
290-324
35
0
-
-
1.18a
ENST00000256216
18a
ENSE00001143958
chr5:
118835012-118835248
237
DHB4_HUMAN
325-403
79
0
-
-
1.19b
ENST00000256216
19b
ENSE00001143950
chr5:
118837736-118837787
52
DHB4_HUMAN
404-421
18
0
-
-
1.20
ENST00000256216
20
ENSE00001143943
chr5:
118842513-118842584
72
DHB4_HUMAN
421-445
25
0
-
-
1.21
ENST00000256216
21
ENSE00001143936
chr5:
118844836-118844939
104
DHB4_HUMAN
445-479
35
0
-
-
1.23
ENST00000256216
23
ENSE00001143927
chr5:
118850676-118850741
66
DHB4_HUMAN
480-501
22
0
-
-
1.24a
ENST00000256216
24a
ENSE00000972280
chr5:
118860911-118860980
70
DHB4_HUMAN
502-525
24
0
-
-
1.25c
ENST00000256216
25c
ENSE00000972281
chr5:
118861612-118861718
107
DHB4_HUMAN
525-560
36
0
-
-
1.26a
ENST00000256216
26a
ENSE00000972282
chr5:
118862828-118862914
87
DHB4_HUMAN
561-589
29
0
-
-
1.27a
ENST00000256216
27a
ENSE00000972283
chr5:
118865589-118865675
87
DHB4_HUMAN
590-618
29
0
-
-
1.28
ENST00000256216
28
ENSE00000972284
chr5:
118866961-118867099
139
DHB4_HUMAN
619-665
47
1
A:6-49
44
1.29b
ENST00000256216
29b
ENSE00000972285
chr5:
118872118-118872245
128
DHB4_HUMAN
665-707
43
1
A:49-91
43
1.30i
ENST00000256216
30i
ENSE00001833743
chr5:
118877600-118878028
429
DHB4_HUMAN
708-736
29
1
A:92-120
29
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1ikta_ (A:)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
SCP-like
(24)
Superfamily
:
SCP-like
(24)
Family
:
Sterol carrier protein, SCP
(9)
Protein domain
:
SCP2-like domain of MFE-2
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1ikta_
A:
[
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1iktA00 (A:6-120)
View:
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Classes
(
)
(
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Architectures
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Nonspecific Lipid-transfer Protein; Chain A
(12)
Homologous Superfamily
:
Nonspecific Lipid-transfer Protein; Chain A
(12)
Human (Homo sapiens)
(3)
1a
1iktA00
A:6-120
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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Asym.Unit (27 KB)
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