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1IKN
Asym. Unit
Info
Asym.Unit (107 KB)
Biol.Unit 1 (102 KB)
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(1)
Title
:
IKAPPABALPHA/NF-KAPPAB COMPLEX
Authors
:
T. Huxford, D. -B. Huang, S. Malek, G. Ghosh
Date
:
13 Nov 98 (Deposition) - 12 Apr 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,C,D
Biol. Unit 1: A,C,D (1x)
Keywords
:
Transcription Factor, Ikb/Nfkb Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Huxford, D. B. Huang, S. Malek, G. Ghosh
The Crystal Structure Of The Ikappabalpha/Nf-Kappab Complex Reveals Mechanisms Of Nf-Kappab Inactivation.
Cell(Cambridge, Mass. ) V. 95 759 1998
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 5)
Info
All PROSITE Patterns/Profiles
1: REL_1 (A:34-40)
2: ANK_REP_REGION (D:73-256)
3: ANK_REPEAT (D:110-142|D:182-214|D:216-248)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
REL_1
PS01204
NF-kappa-B/Rel/dorsal domain signature.
TF65_MOUSE
34-40
1
A:34-40
2
ANK_REP_REGION
PS50297
Ankyrin repeat region circular profile.
IKBA_HUMAN
73-256
1
D:73-256
3
ANK_REPEAT
PS50088
Ankyrin repeat profile.
IKBA_HUMAN
110-142
182-214
216-248
3
D:110-142
D:182-214
D:216-248
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Exons
(5, 5)
Info
All Exons
Exon 1.1 (D:73-76)
Exon 1.2 (D:76-112 (gaps))
Exon 1.3 (D:113-183)
Exon 1.4 (D:183-212)
Exon 1.5 (D:213-293)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000216797
1
ENSE00000889713
chr14:
35873952-35873624
329
IKBA_HUMAN
1-76
76
1
D:73-76
4
1.2
ENST00000216797
2
ENSE00000656089
chr14:
35873004-35872896
109
IKBA_HUMAN
76-112
37
1
D:76-112 (gaps)
37
1.3
ENST00000216797
3
ENSE00000656087
chr14:
35872566-35872356
211
IKBA_HUMAN
113-183
71
1
D:113-183
71
1.4
ENST00000216797
4
ENSE00000656086
chr14:
35872065-35871977
89
IKBA_HUMAN
183-212
30
1
D:183-212
30
1.5
ENST00000216797
5
ENSE00000656083
chr14:
35871869-35871600
270
IKBA_HUMAN
213-302
90
1
D:213-293
81
1.6
ENST00000216797
6
ENSE00000889712
chr14:
35871266-35870717
550
IKBA_HUMAN
303-317
15
0
-
-
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SCOP Domains
(4, 4)
Info
All SCOP Domains
1a: SCOP_d1ikna2 (A:19-191)
2a: SCOP_d1iknc_ (C:)
3a: SCOP_d1ikna1 (A:192-303)
4a: SCOP_d1iknd_ (D:)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
p53-like transcription factors
(153)
Family
:
Rel/Dorsal transcription factors, DNA-binding domain
(34)
Protein domain
:
p65 subunit of NF-kappa B (NFKB), N-terminal domain
(10)
Mouse (Mus musculus) [TaxId: 10090]
(8)
1a
d1ikna2
A:19-191
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
(56)
Protein domain
:
p50 subunit of NF-kappa B transcription factor
(18)
Mouse (Mus musculus) [TaxId: 10090]
(15)
2a
d1iknc_
C:
Protein domain
:
p65 subunit of NF-kappa B (NFKB), dimerization domain
(15)
Mouse (Mus musculus) [TaxId: 10090]
(13)
3a
d1ikna1
A:192-303
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-hairpin-alpha-hairpin repeat
(81)
Superfamily
:
Ankyrin repeat
(79)
Family
:
Ankyrin repeat
(60)
Protein domain
:
I-kappa-B-alpha
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
4a
d1iknd_
D:
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CATH Domains
(3, 4)
Info
all CATH domains
1a: CATH_1iknD00 (D:73-293)
2a: CATH_1iknA01 (A:19-186)
3a: CATH_1iknA02 (A:187-289)
3b: CATH_1iknC00 (C:245-357)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
[code=1.25.40.20, no name defined]
(65)
House mouse (Mus musculus)
(9)
1a
1iknD00
D:73-293
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.340, no name defined]
(30)
House mouse (Mus musculus)
(1)
2a
1iknA01
A:19-186
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
3a
1iknA02
A:187-289
3b
1iknC00
C:245-357
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Pfam Domains
(0, 0)
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Chain D
Asymmetric Unit 1
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Asym.Unit (107 KB)
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