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1IJL
Asym. Unit
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Asym.Unit (46 KB)
Biol.Unit 1 (42 KB)
Biol.Unit 2 (42 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ACIDIC PHOSPHOLIPASE A2 FROM DEINAGKISTRODON ACUTUS
Authors
:
L. Gu, H. Zhang, S. Song, Y. Zhou, Z. Lin
Date
:
27 Apr 01 (Deposition) - 28 Dec 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (1x)
Keywords
:
Three Long Helix, One Two Strand Beta Sheet, Calcium Binding Loop, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Gu, H. Zhang, S. Song, Y. Zhou, Z. Lin
Structure Of An Acidic Phospholipase A2 From The Venom Of Deinagkistrodon Acutus.
Acta Crystallogr. , Sect. D V. 58 104 2002
(for further references see the
PDB file header
)
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: ZINC ION (ZNa)
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Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
2
ZN
1
Ligand/Ion
ZINC ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:33 , HOH A:247
BINDING SITE FOR RESIDUE ZN A 201
2
AC2
SOFTWARE
TYR B:27 , GLY B:29 , GLY B:31 , ASP B:48
BINDING SITE FOR RESIDUE CA B 202
3
AC3
SOFTWARE
TYR A:27 , GLY A:29 , GLY A:31 , ASP A:48
BINDING SITE FOR RESIDUE CA A 203
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SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_PA2A_DEIAC_001 (A39P, chain A/B, )
2: VAR_PA2A_DEIAC_002 (G56S, chain A/B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_PA2A_DEIAC_001
*
A
39
P
PA2A_DEIAC
---
---
A/B
A
39
P
2
UniProt
VAR_PA2A_DEIAC_002
*
G
56
S
PA2A_DEIAC
---
---
A/B
G
56
S
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: PA2_HIS (A:43-50,B:43-50)
2: PA2_ASP (A:85-95,B:85-95)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PA2_HIS
PS00118
Phospholipase A2 histidine active site.
PA2A_DEIAC
43-50
2
A:43-50
B:43-50
2
PA2_ASP
PS00119
Phospholipase A2 aspartic acid active site.
PA2A_DEIAC
85-95
2
A:85-95
B:85-95
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
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All SCOP Domains
1a: SCOP_d1ijla_ (A:)
1b: SCOP_d1ijlb_ (B:)
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(
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Organisms
(
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
Phospholipase A2, PLA2
(282)
Superfamily
:
Phospholipase A2, PLA2
(282)
Family
:
Vertebrate phospholipase A2
(271)
Protein domain
:
Snake phospholipase A2
(124)
Sharp-nosed viper (Deinagkistrodon acutus) [TaxId: 36307]
(1)
1a
d1ijla_
A:
1b
d1ijlb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1ijlA00 (A:1-123)
1b: CATH_1ijlB00 (B:1-123)
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Organisms
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Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Phospholipase A2
(241)
Homologous Superfamily
:
Phospholipase A2
(241)
Chinese moccasin (Deinagkistrodon acutus)
(3)
1a
1ijlA00
A:1-123
1b
1ijlB00
B:1-123
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Pfam Domains
(0, 0)
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Asym.Unit (46 KB)
Header - Asym.Unit
Biol.Unit 1 (42 KB)
Header - Biol.Unit 1
Biol.Unit 2 (42 KB)
Header - Biol.Unit 2
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