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1IIU
Asym. Unit
Info
Asym.Unit (37 KB)
Biol.Unit 1 (32 KB)
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(1)
Title
:
CHICKEN PLASMA RETINOL-BINDING PROTEIN (RBP)
Authors
:
G. Zanotti, V. Calderone, R. Berni
Date
:
24 Apr 01 (Deposition) - 16 Jan 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Rbp, Retinol, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Zanotti, V. Calderone, M. Beda, G. Malpeli, C. Folli, R. Berni
Structure Of Chicken Plasma Retinol-Binding Protein
Biochim. Biophys. Acta V. 1550 64 2001
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
2a: RETINOL (RTLa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CD
1
Ligand/Ion
CADMIUM ION
2
RTL
1
Ligand/Ion
RETINOL
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:33 , ASP A:140 , LYS A:142 , HOH A:260
BINDING SITE FOR RESIDUE CD A 177
2
AC2
SOFTWARE
LEU A:35 , PHE A:36 , MET A:88 , LEU A:97 , GLN A:98
BINDING SITE FOR RESIDUE RTL A 176
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: LIPOCALIN (A:14-27)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LIPOCALIN
PS00213
Lipocalin signature.
RET4_CHICK
35-48
1
A:14-27
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Exons
(5, 5)
Info
All Exons
Exon 1.2b (A:2-19)
Exon 1.3 (A:20-65)
Exon 1.4 (A:65-101)
Exon 1.5 (A:101-172)
Exon 1.6a (A:172-175)
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All Exon Boundaries
1: Boundary 1.1/1.2b
2: Boundary 1.2b/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6a
6: Boundary 1.6a/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSGALT00000010708
1
ENSGALE00000262824
chr6:
21493042-21493062
21
RET4_CHICK
-
0
0
-
-
1.2b
ENSGALT00000010708
2b
ENSGALE00000071060
chr6:
21493232-21493358
127
RET4_CHICK
1-40
40
1
A:2-19
18
1.3
ENSGALT00000010708
3
ENSGALE00000071059
chr6:
21493970-21494106
137
RET4_CHICK
41-86
46
1
A:20-65
46
1.4
ENSGALT00000010708
4
ENSGALE00000071061
chr6:
21494264-21494370
107
RET4_CHICK
86-122
37
1
A:65-101
37
1.5
ENSGALT00000010708
5
ENSGALE00000071058
chr6:
21495784-21495996
213
RET4_CHICK
122-193
72
1
A:101-172
72
1.6a
ENSGALT00000010708
6a
ENSGALE00000262689
chr6:
21498012-21498204
193
RET4_CHICK
193-196
4
1
A:172-175
4
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1iiua_ (A:)
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(
)
(
)
Folds
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)
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)
Superfamilies
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)
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)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Lipocalins
(514)
Superfamily
:
Lipocalins
(514)
Family
:
Retinol binding protein-like
(261)
Protein domain
:
Retinol binding protein
(23)
Chicken (Gallus gallus), plasma isoform [TaxId: 9031]
(1)
1a
d1iiua_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1iiuA00 (A:2-175)
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Organisms
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)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Lipocalin
(526)
Homologous Superfamily
:
[code=2.40.128.20, no name defined]
(352)
Chicken (Gallus gallus)
(6)
1a
1iiuA00
A:2-175
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (37 KB)
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