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1IIP
Asym. Unit
Info
Asym.Unit (56 KB)
Biol.Unit 1 (52 KB)
Biol.Unit 2 (201 KB)
Biol.Unit 3 (102 KB)
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(1)
Title
:
BOVINE CYCLOPHILIN 40, TETRAGONAL FORM
Authors
:
P. Taylor, J. Dornan, A. Carrello, R. F. Minchin, T. Ratajczak, M. D. Wal
Date
:
24 Apr 01 (Deposition) - 16 May 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (4x)
Biol. Unit 3: A (2x)
Keywords
:
Ppiase Immunophilin Tetratricopeptide, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Taylor, J. Dornan, A. Carrello, R. F. Minchin, T. Ratajczak, M. D. Walkinshaw
Two Structures Of Cyclophilin 40: Folding And Fidelity In The Tpr Domains.
Structure V. 9 431 2001
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
1
Ligand/Ion
GLYCEROL
[
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:204 , LYS A:244 , ARG A:251 , HOH A:401 , HOH A:451 , HOH A:574
BINDING SITE FOR RESIDUE GOL A 371
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(4, 4)
Info
All PROSITE Patterns/Profiles
1: CSA_PPIASE_2 (A:19-183)
2: CSA_PPIASE_1 (A:68-85)
3: TPR (A:223-256|A:273-298|-)
4: TPR_REGION (A:223-256|A:273-298)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CSA_PPIASE_2
PS50072
Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.
PPID_BOVIN
19-183
1
A:19-183
2
CSA_PPIASE_1
PS00170
Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.
PPID_BOVIN
68-85
1
A:68-85
3
TPR
PS50005
TPR repeat profile.
PPID_BOVIN
223-256
273-306
307-340
2
A:223-256
A:273-298
-
4
TPR_REGION
PS50293
TPR repeat region circular profile.
PPID_BOVIN
223-256
273-340
2
A:223-256
A:273-298
[
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Exons
(7, 7)
Info
All Exons
Exon 1.1 (A:2-29)
Exon 1.2a (A:29-76)
Exon 1.3b (A:76-111)
Exon 1.4b (A:112-174)
Exon 1.5 (A:175-215)
Exon 1.6 (A:216-251)
Exon 1.7 (A:251-298)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2a
3: Boundary 1.2a/1.3b
4: Boundary 1.3b/1.4b
5: Boundary 1.4b/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/1.7
8: Boundary 1.7/1.8
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000022180
1
ENSBTAE00000181117
chr17:
42259030-42259188
159
PPID_BOVIN
1-29
29
1
A:2-29
28
1.2a
ENSBTAT00000022180
2a
ENSBTAE00000181118
chr17:
42261069-42261209
141
PPID_BOVIN
29-76
48
1
A:29-76
48
1.3b
ENSBTAT00000022180
3b
ENSBTAE00000181119
chr17:
42263497-42263603
107
PPID_BOVIN
76-111
36
1
A:76-111
36
1.4b
ENSBTAT00000022180
4b
ENSBTAE00000242082
chr17:
42265548-42265736
189
PPID_BOVIN
112-174
63
1
A:112-174
63
1.5
ENSBTAT00000022180
5
ENSBTAE00000242081
chr17:
42266538-42266660
123
PPID_BOVIN
175-215
41
1
A:175-215
41
1.6
ENSBTAT00000022180
6
ENSBTAE00000181122
chr17:
42267160-42267266
107
PPID_BOVIN
216-251
36
1
A:216-251
36
1.7
ENSBTAT00000022180
7
ENSBTAE00000181123
chr17:
42268938-42269079
142
PPID_BOVIN
251-298
48
1
A:251-298
48
1.8
ENSBTAT00000022180
8
ENSBTAE00000181124
chr17:
42270628-42270714
87
PPID_BOVIN
299-327
29
0
-
-
1.9
ENSBTAT00000022180
9
ENSBTAE00000181125
chr17:
42270815-42270857
43
PPID_BOVIN
328-342
15
0
-
-
1.10
ENSBTAT00000022180
10
ENSBTAE00000355365
chr17:
42271568-42271947
380
PPID_BOVIN
342-370
29
0
-
-
[
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]
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1iipa1 (A:197-298)
2a: SCOP_d1iipa2 (A:2-196)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
TPR-like
(83)
Family
:
Tetratricopeptide repeat (TPR)
(47)
Protein domain
:
Cyclophilin 40
(2)
Cow (Bos taurus) [TaxId: 9913]
(2)
1a
d1iipa1
A:197-298
Class
:
All beta proteins
(24004)
Fold
:
Cyclophilin-like
(169)
Superfamily
:
Cyclophilin-like
(169)
Family
:
Cyclophilin (peptidylprolyl isomerase)
(160)
Protein domain
:
Cyclophilin 40 isomerase domain
(2)
Cow (Bos taurus) [TaxId: 9913]
(2)
2a
d1iipa2
A:2-196
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1iipA02 (A:214-298)
2a: CATH_1iipA01 (A:2-185)
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)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
DNA polymerase; domain 1
(617)
Homologous Superfamily
:
[code=1.10.150.160, no name defined]
(1)
Cattle (Bos taurus)
(1)
1a
1iipA02
A:214-298
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Cyclophilin
(95)
Homologous Superfamily
:
Cyclophilin
(95)
Cattle (Bos taurus)
(2)
2a
1iipA01
A:2-185
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (56 KB)
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Biol.Unit 3 (102 KB)
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