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1IIL
Biol. Unit 1
Info
Asym.Unit (221 KB)
Biol.Unit 1 (57 KB)
Biol.Unit 2 (57 KB)
Biol.Unit 3 (59 KB)
Biol.Unit 4 (59 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PRO253ARG APERT MUTANT FGF RECEPTOR 2 (FGFR2) IN COMPLEX WITH FGF2
Authors
:
O. A. Ibrahimi, A. V. Eliseenkova, A. N. Plotnikov, D. M. Ornitz, M. Mohammadi
Date
:
23 Apr 01 (Deposition) - 09 May 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,E (1x)
Biol. Unit 2: B,F (1x)
Biol. Unit 3: C,G (1x)
Biol. Unit 4: D,H (1x)
Keywords
:
Immunoglobulin Like Domain, B-Trefoil, Growth Factor/Growth Factor Receptor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
O. A. Ibrahimi, A. V. Eliseenkova, A. N. Plotnikov, K. Yu, D. M. Ornitz, M. Mohammadi
Structural Basis For Fibroblast Growth Factor Receptor 2 Activation In Apert Syndrome.
Proc. Natl. Acad. Sci. Usa V. 98 7182 2001
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(45, 45)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_017259 (A172F, chain E, )
02: VAR_017260 (M186T, chain E, )
03: VAR_036380 (R203C, chain E, )
04: VAR_004114 (S252F, chain E, )
05: VAR_004113 (S252L, chain E, )
06: VAR_004115 (S252W, chain E, )
07: VAR_004117 (R253R, chain E, )
08: VAR_017261 (P263L, chain E, )
09: VAR_004118 (S267P, chain E, )
10: VAR_042205 (G272V, chain E, )
11: VAR_004120 (F276V, chain E, )
12: VAR_004121 (C278F, chain E, )
13: VAR_017263 (C278Y, chain E, )
14: VAR_017264 (Y281C, chain E, )
15: VAR_042206 (D283N, chain E, )
16: VAR_017265 (I288S, chain E, )
17: VAR_004123 (Q289P, chain E, )
18: VAR_004124 (W290C, chain E, )
19: VAR_017266 (W290G, chain E, )
20: VAR_004125 (W290R, chain E, )
21: VAR_004126 (K292E, chain E, )
22: VAR_004128 (A314S, chain E, )
23: VAR_017267 (A315S, chain E, )
24: VAR_004129 (D321A, chain E, )
25: VAR_004130 (Y328C, chain E, )
26: VAR_004131 (N331I, chain E, )
27: VAR_017268 (A337P, chain E, )
28: VAR_004133 (G338E, chain E, )
29: VAR_015011 (G338R, chain E, )
30: VAR_017269 (Y340C, chain E, )
31: VAR_004134 (Y340H, chain E, )
32: VAR_004135 (T341P, chain E, )
33: VAR_004136 (C342F, chain E, )
34: VAR_017270 (C342G, chain E, )
35: VAR_004137 (C342R, chain E, )
36: VAR_004138 (C342S, chain E, )
37: VAR_017271 (C342W, chain E, )
38: VAR_004139 (C342Y, chain E, )
39: VAR_004140 (A344G, chain E, )
40: VAR_004141 (A344P, chain E, )
41: VAR_004142 (S347C, chain E, )
42: VAR_004143 (S351C, chain E, )
43: VAR_004144 (S354C, chain E, )
44: VAR_017272 (S354Y, chain E, )
45: VAR_004146 (V359F, chain E, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_017259
A
172
F
FGFR2_HUMAN
Disease (PS)
---
E
A
172
F
02
UniProt
VAR_017260
M
186
T
FGFR2_HUMAN
Polymorphism
755793
E
M
186
T
03
UniProt
VAR_036380
R
203
C
FGFR2_HUMAN
Unclassified
---
E
R
203
C
04
UniProt
VAR_004114
S
252
F
FGFR2_HUMAN
Disease (APRS)
---
E
S
252
F
05
UniProt
VAR_004113
S
252
L
FGFR2_HUMAN
Disease (CS)
---
E
S
252
L
06
UniProt
VAR_004115
S
252
W
FGFR2_HUMAN
Disease (PS)
---
E
S
252
W
07
UniProt
VAR_004117
P
253
R
FGFR2_HUMAN
Disease (APRS)
---
E
R
253
R
08
UniProt
VAR_017261
P
263
L
FGFR2_HUMAN
Disease (CS)
---
E
P
263
L
09
UniProt
VAR_004118
S
267
P
FGFR2_HUMAN
Disease (CS)
---
E
S
267
P
10
UniProt
VAR_042205
G
272
V
FGFR2_HUMAN
Unclassified
---
E
G
272
V
11
UniProt
VAR_004120
F
276
V
FGFR2_HUMAN
Disease (CS)
---
E
F
276
V
12
UniProt
VAR_004121
C
278
F
FGFR2_HUMAN
Disease (PS)
---
E
C
278
F
13
UniProt
VAR_017263
C
278
Y
FGFR2_HUMAN
Disease (CS)
---
E
C
278
Y
14
UniProt
VAR_017264
Y
281
C
FGFR2_HUMAN
Disease (CS)
---
E
Y
281
C
15
UniProt
VAR_042206
D
283
N
FGFR2_HUMAN
Unclassified
---
E
D
283
N
16
UniProt
VAR_017265
I
288
S
FGFR2_HUMAN
Disease (CS)
---
E
I
288
S
17
UniProt
VAR_004123
Q
289
P
FGFR2_HUMAN
Disease (JWS)
---
E
Q
289
P
18
UniProt
VAR_004124
W
290
C
FGFR2_HUMAN
Disease (PS)
---
E
W
290
C
19
UniProt
VAR_017266
W
290
G
FGFR2_HUMAN
Disease (CS)
---
E
W
290
G
20
UniProt
VAR_004125
W
290
R
FGFR2_HUMAN
Disease (CS)
---
E
W
290
R
21
UniProt
VAR_004126
K
292
E
FGFR2_HUMAN
Disease (CS)
---
E
K
292
E
23
UniProt
VAR_004128
A
314
S
FGFR2_HUMAN
Unclassified
---
E
A
314
S
24
UniProt
VAR_017267
A
315
S
FGFR2_HUMAN
Unclassified
---
E
A
315
S
25
UniProt
VAR_004129
D
321
A
FGFR2_HUMAN
Disease (PS)
---
E
D
321
A
26
UniProt
VAR_004130
Y
328
C
FGFR2_HUMAN
Disease (CS)
---
E
Y
328
C
27
UniProt
VAR_004131
N
331
I
FGFR2_HUMAN
Disease (CS)
---
E
N
331
I
28
UniProt
VAR_017268
A
337
P
FGFR2_HUMAN
Disease (CS)
---
E
A
337
P
29
UniProt
VAR_004133
G
338
E
FGFR2_HUMAN
Disease (CS)
---
E
G
338
E
30
UniProt
VAR_015011
G
338
R
FGFR2_HUMAN
Disease (CS)
---
E
G
338
R
31
UniProt
VAR_017269
Y
340
C
FGFR2_HUMAN
Disease (PS)
---
E
Y
340
C
32
UniProt
VAR_004134
Y
340
H
FGFR2_HUMAN
Disease (CS)
---
E
Y
340
H
33
UniProt
VAR_004135
T
341
P
FGFR2_HUMAN
Disease (PS)
---
E
T
341
P
34
UniProt
VAR_004136
C
342
F
FGFR2_HUMAN
Disease (CS)
---
E
C
342
F
35
UniProt
VAR_017270
C
342
G
FGFR2_HUMAN
Disease (PS)
---
E
C
342
G
36
UniProt
VAR_004137
C
342
R
FGFR2_HUMAN
Disease (PS)
---
E
C
342
R
37
UniProt
VAR_004138
C
342
S
FGFR2_HUMAN
Disease (PS)
---
E
C
342
S
38
UniProt
VAR_017271
C
342
W
FGFR2_HUMAN
Disease (CS)
---
E
C
342
W
39
UniProt
VAR_004139
C
342
Y
FGFR2_HUMAN
Disease (PS)
---
E
C
342
Y
40
UniProt
VAR_004140
A
344
G
FGFR2_HUMAN
Disease (JWS)
---
E
A
344
G
41
UniProt
VAR_004141
A
344
P
FGFR2_HUMAN
Disease (PS)
---
E
A
344
P
42
UniProt
VAR_004142
S
347
C
FGFR2_HUMAN
Disease (CS)
---
E
S
347
C
43
UniProt
VAR_004143
S
351
C
FGFR2_HUMAN
Disease (PS)
---
E
S
351
C
44
UniProt
VAR_004144
S
354
C
FGFR2_HUMAN
Disease (CS)
---
E
S
354
C
45
UniProt
VAR_017272
S
354
Y
FGFR2_HUMAN
Disease (CS)
---
E
S
354
Y
46
UniProt
VAR_004146
V
359
F
FGFR2_HUMAN
Disease (PS)
---
E
V
359
F
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: HBGF_FGF (A:89-112)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HBGF_FGF
PS00247
HBGF/FGF family signature.
FGF2_HUMAN
222-245
1
A:89-112
-
-
-
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d1iila_ (A:)
1b: SCOP_d1iilb_ (B:)
1c: SCOP_d1iilc_ (C:)
1d: SCOP_d1iild_ (D:)
2a: SCOP_d1iile1 (E:150-250)
2b: SCOP_d1iile2 (E:251-361)
2c: SCOP_d1iilf1 (F:150-250)
2d: SCOP_d1iilf2 (F:251-361)
2e: SCOP_d1iilg1 (G:150-250)
2f: SCOP_d1iilg2 (G:251-364)
2g: SCOP_d1iilh1 (H:150-250)
2h: SCOP_d1iilh2 (H:251-364)
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)
(
)
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(
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(
)
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(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
beta-Trefoil
(385)
Superfamily
:
Cytokine
(169)
Family
:
Fibroblast growth factors (FGF)
(120)
Protein domain
:
Basic FGF (FGF2)
(16)
Human (Homo sapiens) [TaxId: 9606]
(16)
1a
d1iila_
A:
1b
d1iilb_
B:
1c
d1iilc_
C:
1d
d1iild_
D:
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
I set domains
(152)
Protein domain
:
Fibroblast growth factor receptor, FGFR
(15)
Human (Homo sapiens), FGFR2a [TaxId: 9606]
(10)
2a
d1iile1
E:150-250
2b
d1iile2
E:251-361
2c
d1iilf1
F:150-250
2d
d1iilf2
F:251-361
2e
d1iilg1
G:150-250
2f
d1iilg2
G:251-364
2g
d1iilh1
H:150-250
2h
d1iilh2
H:251-364
[
close SCOP info
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CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_1iilE01 (E:150-250)
1b: CATH_1iilF01 (F:150-250)
1c: CATH_1iilG01 (G:150-250)
1d: CATH_1iilH01 (H:150-250)
1e: CATH_1iilG02 (G:251-357)
1f: CATH_1iilH02 (H:251-357)
1g: CATH_1iilE02 (E:251-357)
1h: CATH_1iilF02 (F:251-357)
2a: CATH_1iilA00 (A:22-155)
2b: CATH_1iilB00 (B:22-154)
2c: CATH_1iilC00 (C:24-155)
2d: CATH_1iilD00 (D:23-154)
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Topologies
(
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
1iilE01
E:150-250
1b
1iilF01
F:150-250
1c
1iilG01
G:150-250
1d
1iilH01
H:150-250
1e
1iilG02
G:251-357
1f
1iilH02
H:251-357
1g
1iilE02
E:251-357
1h
1iilF02
F:251-357
Architecture
:
Trefoil
(289)
Topology
:
Trefoil (Acidic Fibroblast Growth Factor, subunit A)
(289)
Homologous Superfamily
:
[code=2.80.10.50, no name defined]
(289)
Human (Homo sapiens)
(131)
2a
1iilA00
A:22-155
2b
1iilB00
B:22-154
2c
1iilC00
C:24-155
2d
1iilD00
D:23-154
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asymmetric Unit 1
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Asym.Unit (221 KB)
Header - Asym.Unit
Biol.Unit 1 (57 KB)
Header - Biol.Unit 1
Biol.Unit 2 (57 KB)
Header - Biol.Unit 2
Biol.Unit 3 (59 KB)
Header - Biol.Unit 3
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